Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c18f
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570...    28   7.2  
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726...    27   9.5  
03_04_0240 + 19232391-19233098                                         27   9.5  

>03_02_0719 +
           10654842-10654977,10655039-10655124,10655226-10657001,
           10657782-10657926,10658017-10658735
          Length = 953

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 394 ESSYASNVSSKPGCGTDGPKGLFSSTSAYGMPKNFENFP 278
           ES ++S+  S     +DG KG  SS+    MPKNF + P
Sbjct: 701 ESCWSSDCCSG---SSDGSKGYSSSSEVKNMPKNFLSNP 736


>09_06_0087 +
           20771329-20771450,20771462-20771771,20771893-20772672,
           20772854-20774002
          Length = 786

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 228 GLSSTGQPLLT-TSPKEQPIAAYLHWKCAVC 139
           G S+ G+P    T P+ +PI  +LH +C  C
Sbjct: 44  GSSAAGRPTTAFTPPEPRPIPRWLHGRCFRC 74


>03_04_0240 + 19232391-19233098
          Length = 235

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/63 (31%), Positives = 23/63 (36%)
 Frame = -1

Query: 192 SPKEQPIAAYLHWKCAVCALSDILYKTGSHFRQNTWTPDVPRTEVGQSNEQ*ARPRASVA 13
           SP   P  A   W C  C L+         F   T T DV  T  G++ E   R R   A
Sbjct: 101 SPLAFPKLAIFAWMCRTCGLAPTAELFAVLFTACTTTKDV-NTHAGRAEEDSFRLRELYA 159

Query: 12  QIG 4
             G
Sbjct: 160 SAG 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,013
Number of Sequences: 37544
Number of extensions: 341164
Number of successful extensions: 919
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)