Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c18f
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase f...    31   0.49 
At2g21400.1 68415.m02547 lateral root primordium (LRP) protein-r...    31   0.85 
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa...    29   2.6  
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa...    29   2.6  
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa...    29   2.6  
At5g22450.1 68418.m02618 expressed protein                             28   6.0  
At4g30120.1 68417.m04282 ATPase E1-E2 type family protein / heav...    28   6.0  
At1g74300.1 68414.m08604 esterase/lipase/thioesterase family pro...    28   6.0  
At1g74290.1 68414.m08603 esterase/lipase/thioesterase family pro...    28   6.0  
At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger) fa...    27   7.9  

>At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 330

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = -2

Query: 458 VQVQTLETTNSDALSNLRTNYGIIVCFE 375
           VQV+ L + +SD+L+NLR  YG+I  F+
Sbjct: 25  VQVEELYSLDSDSLNNLRPVYGLIFLFK 52


>At2g21400.1 68415.m02547 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 174

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 342 ARKDCSRRLVRTVCPKTSRTFHFRTSVP**GPAEYQQAGLSSTGQPLLTTSPK 184
           A+KDC     RT C   S+ FH +T +       Y+++      QPL T+ PK
Sbjct: 16  AKKDCVYMRCRTCCK--SKAFHCQTHIKSTWVPAYRRSHHKHQSQPLSTSIPK 66


>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 436

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 154 PVQVCCDWLLFWACCQQWL 210
           PV  CC  L  W C  QWL
Sbjct: 149 PVLTCCGHLYCWPCLYQWL 167


>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 436

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 154 PVQVCCDWLLFWACCQQWL 210
           PV  CC  L  W C  QWL
Sbjct: 149 PVLTCCGHLYCWPCLYQWL 167


>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 436

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 154 PVQVCCDWLLFWACCQQWL 210
           PV  CC  L  W C  QWL
Sbjct: 149 PVLTCCGHLYCWPCLYQWL 167


>At5g22450.1 68418.m02618 expressed protein
          Length = 1180

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 270 SENGKFSKFLGIPYALVDENNPFGPSVPHP 359
           + +G+  + LG+P     E+N FG S P P
Sbjct: 65  TRSGELRRVLGVPSRASSEDNSFGMSHPRP 94


>At4g30120.1 68417.m04282 ATPase E1-E2 type family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux ATPase [Streptococcus thermophilus]
           GI:22416341; contains Pfam profile PF00122: E1-E2 ATPase
          Length = 542

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 83  VQVFCRK*LPVLYKISDSAQTAHFQCKYAAIGCSFGLVVSS 205
           V   C   +PVL K+ D +   H        GC  GL++S+
Sbjct: 321 VSAACFAVIPVLLKVQDLSHWFHLALVVLVSGCPCGLILST 361


>At1g74300.1 68414.m08604 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
           [Rhodococcus sp. RHA1] GI:8978311; contains Interpro
           entry IPR000379
          Length = 346

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 73  HIWRPSVLSEVTTGLI*NI*QRTNS-AFPVQVCCDWLLFWACCQQWLPG 216
           + WR   L+  T G   N+ Q+ +  A  V     WL++W   Q W PG
Sbjct: 174 YYWRNLPLNISTEGF--NLQQKRDQWAVRVAHYAPWLIYWWNTQNWFPG 220


>At1g74290.1 68414.m08603 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
           esterase/lipase/thioesterase family
          Length = 371

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 73  HIWRPSVLSEVTTGLI*NI*QRTNS-AFPVQVCCDWLLFWACCQQWLPG 216
           + WR   L+  T G   N  Q+ +  A  V     WL++W   Q+W PG
Sbjct: 193 YYWRNLPLNVSTEGF--NFQQKRDQWAVRVAHYAPWLIYWWNTQKWFPG 239


>At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger)
           family protein (ATL3) identical to RING-H2 zinc finger
           protein (ATL3) GB:AF132013 (Arabidopsis thaliana)
          Length = 324

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 70  TNRGRAIERTMSTSTRVGCSNRS 2
           T R R++ R +S   RVGCSN S
Sbjct: 287 TTRLRSLRRFLSRDKRVGCSNSS 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,977
Number of Sequences: 28952
Number of extensions: 271988
Number of successful extensions: 757
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)