Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c17r
         (405 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q232V3 Cluster: Putative uncharacterized protein; n=1; ...    33   2.9  
UniRef50_Q5CSI0 Cluster: Putative uncharacterized protein; n=4; ...    31   8.7  

>UniRef50_Q232V3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 805

 Score = 32.7 bits (71), Expect = 2.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 261 QVHFYKTSLPRKICPVLSVSNVVDIEMIVVKVIKLLMNRTREAPGRMYSV 112
           Q H Y T+     CP+ +  N + I+  +  +IK ++N  +  P   +SV
Sbjct: 441 QAHRYATNHQPLNCPIQNCQNCIQIDNDIQSIIKEILNNEKNKPNLAHSV 490


>UniRef50_Q5CSI0 Cluster: Putative uncharacterized protein; n=4;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 2087

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 356 INFYNISRVNYVYETEFVCQSSMVGMNV*QNSRSIFTKRVCLEK-SVLC 213
           I  + +++ NY+YE  F  +   + +N   +++SIF + +  EK S +C
Sbjct: 495 ITDFELAQYNYLYENVFSMKIKTILLNFKTSNKSIFLQEIVFEKESTIC 543


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 320,685,332
Number of Sequences: 1657284
Number of extensions: 5369613
Number of successful extensions: 10520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10517
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)