Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c17r
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   0.63 
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    25   5.9  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    24   7.8  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    24   7.8  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 205 DGEHRTDFSRQTRFVKMDLLFCYTFIPTIDD 297
           D  H T FS++ R   ++L  C+T +P+ D+
Sbjct: 751 DNPHTT-FSKRVRIFLLNLAICHTCLPSFDE 780


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 291 DGRNERVTKQQVHFYKTSLPRKICPVLSVSNVV 193
           DG+NE+ T + V   +TSL +     +SV   V
Sbjct: 565 DGKNEKTTHEDVTMKETSLKKMDDERISVDEAV 597


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 261 QVHFYKTSLPRKICPVLSVSNVVDIEMIVVKVIKLLMNRTREA 133
           Q HF  +    K   + SV N+  IE I  +    L+N  REA
Sbjct: 69  QWHFIGSLQSSKCKKIASVKNLYSIETIDTEKKARLVNSAREA 111


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 118 QCAVCSIAYCSLP 80
           +C  CS  YCSLP
Sbjct: 15  KCPKCSFPYCSLP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,246
Number of Sequences: 5004
Number of extensions: 25058
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)