Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c17r
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32)                    28   2.5  
SB_26146| Best HMM Match : Cgr1 (HMM E-Value=5.2)                      28   3.3  
SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0)               27   4.4  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32)
          Length = 701

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +3

Query: 231 EANSFCKNGPAVLLHVHSDHRRLTNKLCF 317
           + NS   NG  + L VHS  R LTNKL F
Sbjct: 269 QPNSRITNGNRMELLVHSISRNLTNKLLF 297


>SB_26146| Best HMM Match : Cgr1 (HMM E-Value=5.2)
          Length = 164

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 238 FASKNLSCALRLKCCRHRNDRR*SYKVVNESDKRSARTDVQCAVCSIAYC 89
           F+ K    A   K C+ +N R    K  N++ KR+ +T  +C  C +  C
Sbjct: 101 FSEKLADKAKACKNCQSKNKR---LKAGNKAVKRAKKTQNRCRKCDVQLC 147


>SB_17627| Best HMM Match : F_actin_cap_B (HMM E-Value=0)
          Length = 480

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -1

Query: 225 ICPVLSVSNVVDIEMIVVKVIKLLMNRTR 139
           +CP+L ++ ++D+   V+KVI+ L + T+
Sbjct: 326 LCPLLIMTRILDLSFNVIKVIENLNSLTK 354


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 294  VDGRNER-VTKQQVHFYKTSLPRKICPVLSVSNVVDIEMIVVKVIKLLMNRTRE 136
            V+GR+ + +T Q+V     +LPR++  V+S SN      + +  + +L N++ E
Sbjct: 2558 VNGRSTKGLTHQEVLNLLQNLPRRVVLVVSRSNFPRKRSLSLSSLNILHNKSSE 2611


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,472,648
Number of Sequences: 59808
Number of extensions: 190962
Number of successful extensions: 412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)