Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c17r
         (405 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   5.6  
AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide recepto...    23   5.6  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   5.6  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    22   7.4  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 241 EFASKNLSCALRLKCCRHRND 179
           EF S+  +C+ RL C   R+D
Sbjct: 400 EFVSRPPACSTRLHCTMIRHD 420


>AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide receptor
           protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 157 VNESDKRSA--RTDVQCAVCSIAYCSLP*EMFNIID 56
           ++ S+KR     T + C V     C+LP  M NI++
Sbjct: 299 LSRSEKREIGLATMLICVVIVFLLCNLPAMMINIVE 334


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 229  KNLSCALRLKCCRHRND 179
            KN  C L   CC H +D
Sbjct: 1063 KNERCTLFTNCCNHISD 1079


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 118 VHPSGRFSCPIH*QLYNFNDD 180
           VH  GRF CP+    Y  +D+
Sbjct: 518 VHFPGRFECPLCRATYTRSDN 538


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,005
Number of Sequences: 2352
Number of extensions: 6160
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 32494788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)