Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c17r
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    28   2.9  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   5.1  
AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical...    26   9.0  

>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 14  SVTLTRSIQ-IYLYSINNIEHFLRKTTIRYATYSTLYIR 127
           S+TLT+ I  I+++  + I  F R  TIRY   + +YI+
Sbjct: 313 SLTLTKLIDVIFIFPRSIISIFFRHHTIRYLLQNPIYIQ 351


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 277 TCNKTAGPFLQNEFASKNLSCALRLKCCRHRNDR 176
           T N    PF+  E AS+++ CA R   C     R
Sbjct: 395 TANPCTDPFVCTEVASQSMCCASRKSICSEAGAR 428


>AC024791-38|AAY55888.1|  246|Caenorhabditis elegans Hypothetical
           protein Y47G6A.32 protein.
          Length = 246

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 246 KTSLPRKICPVLSVSNVV 193
           K SLPR +CP+ + S +V
Sbjct: 67  KASLPRVVCPIRTTSRIV 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,840,774
Number of Sequences: 27780
Number of extensions: 143912
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)