Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c17r
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   2.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   9.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 76  PKEDYNTLCYIQHTVHPSGRFSCPIH 153
           P   Y  +C   HT  P    +C IH
Sbjct: 151 PFTTYTPVCEYDHTWWPYDILNCTIH 176


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 148 SDKRSARTD-VQCAVCSIAYCS 86
           +DK + R +  +C +C   YCS
Sbjct: 26  ADKHAERQEEYRCVICERVYCS 47


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 RRSFRCRQHLRRRAQDRFFEANS 242
           RR+F C   L+R  QD+  ++++
Sbjct: 12  RRNFSCYYSLKRHFQDKHEQSDT 34


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 245 KRVCLEKSVLCSPS 204
           KR+ LE+S LC P+
Sbjct: 202 KRIKLEQSPLCPPA 215


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = -1

Query: 297 VVDGRNERVTKQQVHFYKTSLPRKICPVLSVSNVVDIE 184
           ++D R +++   +    + ++  K  P++ V N++D+E
Sbjct: 370 IIDLRKKQLKSLEDWENEMNIITKGKPLIRVENIIDLE 407


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 341 ISRVNYVYETEFVCQSSMVG 282
           I  V+Y     ++CQ+S +G
Sbjct: 461 IKNVDYADTGAYMCQASSIG 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,587
Number of Sequences: 438
Number of extensions: 1760
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)