Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c17r
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ...    27   6.3  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    27   6.3  
At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearl...    26   8.3  

>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
           Homo sapiens, EMBL:HSU81006
          Length = 627

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 320 YETEFVCQSSMVGMNV*QNSRSIFTKRVCLEKSVLCSPSQ 201
           Y T   C S+ V M+V +    +F+  V  E+S +  PS+
Sbjct: 207 YTTPIKCDSTRVSMSVKEGQSIVFSYEVSFEESDIKWPSR 246


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 130 RTDVQCAVCSIAYCSLP 80
           +T V C VCS+AY S P
Sbjct: 522 KTSVTCNVCSLAYSSCP 538


>At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearly
           identical to topoisomerase 6 subunit B [Arabidopsis
           thaliana] GI:12331188
          Length = 670

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 307 LFVSRRWSE*TCNKTAGPFLQNEFASKNLSCALRL 203
           L + +R    T  KT   FLQNEF + N + A RL
Sbjct: 327 LLLIKRLITDTSKKTLLQFLQNEFVNINKTLAARL 361


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,026,090
Number of Sequences: 28952
Number of extensions: 122412
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)