Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c17f
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 1.8
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit... 26 3.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 4.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 4.3
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 4.3
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 4.3
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 25 5.6
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 5.6
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 24 9.8
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 24 9.8
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 365 RVLHRVPQTFLRCIYCSNRTRTETHNYTSPP 457
R L+ +P+T L Y SN + H SPP
Sbjct: 45 RRLYNLPRTLLNSRYYSNHSHGLVHGSKSPP 75
>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
Tom40|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 17 AFVVVRLFITRHFCVKTWFRV 79
AF VR +T+ FC WF V
Sbjct: 50 AFTGVRADVTKGFCTSPWFTV 70
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 4.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 151 FYTTVFNFNNNLIVSLLFILQLFMNTEPC-FDTKMSRNK 38
F+T F F+NN+++S +FI + +N P D KM + K
Sbjct: 723 FFTLWFLFSNNVVLS-MFIAVIQVNFAPSESDLKMEQLK 760
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 179 IPKRNCARTSTLIPVLLLVKYQDRVIVMISIQG 277
+P++NCA S L P +QD + ++I+G
Sbjct: 146 LPEKNCAFISFLDPSHATAFFQDAALKRLTIRG 178
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 286 YDEKNSEGESGVKSITDRLSQVMVSVQSPAQSTADIPPLYL 408
++ K+ +GE +++TD+ S + S +++ D+ P YL
Sbjct: 155 FERKSMQGELKERNLTDKTSTLSTSF---GETSPDVNPFYL 192
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 4.3
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 172 KKDSETKLREDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDRLS 345
KK++E + + DSG G S+ D+ ++D+ NS ++ K T++ S
Sbjct: 74 KKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIVDWKANNSNEKAQNKIATNKES 131
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 5.6
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 241 SGPCDSNDIDSGMIDYDEKNSEG-ESGVKSITDRLSQVMVSVQSPAQSTADIPP 399
S P + SG++ +K S+ S K + + S+ S A STA +PP
Sbjct: 128 SAPAVNETSSSGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASLPP 181
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 5.6
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 175 KDSETKLREDEYA-DSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDRLSQV 351
+DS L DE D + G+ S DS ++D +S +S KS+ + +
Sbjct: 51 QDSALPLGIDENELDEIDINGD-SKKLDSVEVDESHDVNSPSDSRLKSSFKSVLELTANS 109
Query: 352 MVSVQSPAQST 384
MVSV +P+ T
Sbjct: 110 MVSVLTPSTKT 120
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 134 ENGRIELNQK*VPKKIPKRNCARTSTLI 217
+NG I K P K PKR +++STL+
Sbjct: 358 DNGEILNKLKDSPFKKPKRRYSKSSTLV 385
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 24.2 bits (50), Expect = 9.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 94 LQLFMNTEPCFDTK 53
L+LF+N +PCF K
Sbjct: 181 LELFVNDKPCFQVK 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,302
Number of Sequences: 5004
Number of extensions: 31185
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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