Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c17f
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0011 + 14088375-14089241                                         29   2.4  
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921...    28   4.2  
02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642...    27   5.6  
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489...    27   9.7  
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    27   9.7  

>10_08_0011 + 14088375-14089241
          Length = 288

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +1

Query: 238 ISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDRLSQVMVSVQS 369
           +SG  D+  +D   +DY+  N +G +GV +  + + +++  +++
Sbjct: 116 VSGIIDAYGLDGVDVDYEHFNDDGGAGVDTFVECIGRLLTELKA 159


>02_02_0346 -
           9214365-9214583,9214830-9214919,9215012-9215177,
           9215601-9215911,9215944-9216566,9216779-9216968,
           9217096-9217197,9217285-9217425,9217815-9218411,
           9219126-9219286,9220709-9220824,9221538-9221654,
           9221746-9221808,9221879-9221949
          Length = 988

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 169 AKKDSETKLREDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDR 339
           A ++      EDEY D    + +     D +D D G  D DE  SE +    + T R
Sbjct: 531 ADEEEVEDTEEDEYTDEDGDSDDDEDEGDEDDDDEGEEDDDEDRSENDDDDGAKTGR 587


>02_02_0654 -
           12662931-12663200,12663296-12663550,12664097-12664268,
           12664354-12664581,12664727-12664860,12665018-12665101,
           12665332-12665538,12665641-12665973,12666175-12666281,
           12666439-12666593,12666778-12666810,12666924-12666972,
           12667152-12667312,12667413-12668313,12668391-12668481,
           12668558-12668749
          Length = 1123

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 237 FTSNKTGISVLVLAQFRFGIFFGTHFW 157
           +  N +  S+  L  F +G+FFGT FW
Sbjct: 860 YWKNPSYNSLRYLTTFLYGLFFGTVFW 886


>06_03_0947 +
           26248378-26248494,26248600-26248764,26248843-26248952,
           26249065-26249179,26249310-26249408,26249485-26249694,
           26249802-26250965
          Length = 659

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 238 ISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDRLSQVMVSVQSPAQSTA 387
           IS  C S+D+ S   +YD +  E E+ +K+      +++V   SP +  A
Sbjct: 210 ISLLCTSDDLRSTKHEYDGEWKENETRLKTCDPHSRRLVVDSDSPQEVEA 259


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 169 AKKDSETKLREDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGE 312
           A ++     +EDEY D    + +     + +D D G  D DE  SE +
Sbjct: 229 ADEEEVEDTKEDEYTDEDGDSDDDEDEGEEDDDDEGEEDDDEDRSEND 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,442,033
Number of Sequences: 37544
Number of extensions: 173112
Number of successful extensions: 471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)