Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c17f
(461 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7) 29 2.5
SB_13017| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-10) 29 2.5
SB_50674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_30012| Best HMM Match : Retrotrans_gag (HMM E-Value=1.1) 28 3.3
SB_4293| Best HMM Match : TFIID-18kDa (HMM E-Value=0) 27 5.7
SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13) 27 5.7
SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25) 27 5.7
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) 27 7.6
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08) 27 10.0
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 27 10.0
SB_18066| Best HMM Match : TTL (HMM E-Value=3.5e-10) 27 10.0
SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
Length = 241
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 154 EPKMSAKKDSETKL---REDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGES 315
E K KKD + K+ +ED+ + +GE D +D D + DEK+ E+
Sbjct: 169 EKKEDEKKDDDKKVDEKKEDDKKNDSSASGESEDSDDGDDEDDEEDEEDEKDESDEA 225
>SB_13017| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-10)
Length = 520
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 136 KRSYRIEPKMSAKKDSETKLREDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGES 315
K+ R K+ +K S + R D + V + D NDIDS +D +E + +
Sbjct: 432 KKHLRFIAKLRSKAAS-VQCRADNDEINEKVQSDTIDETDDNDIDSEGLDQNESHEDEAE 490
Query: 316 GVKSITDRL 342
+ +TD +
Sbjct: 491 TIAGVTDTM 499
>SB_50674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 163 MSAKKDSETK-----LREDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKS 327
+S+KKDS + RE+E D + G + ++ D D+G EK + SG K
Sbjct: 16 ISSKKDSSDQEYIHVKREEEVDDDDYEFGGKTCAVEAGDEDNGEEKEKEKTLDETSGTKG 75
Query: 328 ITDRLSQ 348
I+ + Q
Sbjct: 76 ISSDVPQ 82
>SB_30012| Best HMM Match : Retrotrans_gag (HMM E-Value=1.1)
Length = 306
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 175 KDSETKLREDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDRLSQVM 354
++ E +ED Y D + GE+S D +I+++ + +SG K L+ V
Sbjct: 89 REEEGSYQEDYYLDDCYFMGEVSTTNDEFWSAEVLINHNPCTLKLDSGSKLKEKLLAMVR 148
Query: 355 VSVQSPAQSTAD 390
V SP D
Sbjct: 149 QKVISPVSEPTD 160
>SB_4293| Best HMM Match : TFIID-18kDa (HMM E-Value=0)
Length = 160
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +1
Query: 148 RIEPKMSAK-KDSETKLREDEYADSGFVT---GEISGPCDSNDIDSGMIDYDEKNSEG 309
R +PK A+ KD T E + A F GEIS P D D D G D D+ + +G
Sbjct: 89 RKDPKKYARVKDLLTMNEELKKARKAFDAESYGEISFPYDDADDDGGGDDDDDDDGDG 146
>SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)
Length = 440
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 250 CDSNDIDSGMIDYDEKNSEGESGVKSITDRLSQVMVSVQSPAQSTADIPP 399
CD N + ++ +++ S + SITD +SQ+ +SPA +T + P
Sbjct: 77 CDQNQSKQ---EPEKTDTKTMSTISSITDIISQIPGMQESPASTTEESSP 123
>SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)
Length = 477
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 253 DSNDIDSGMIDYDEKNSEGESGVKSITDRLSQVMVSVQ-SPAQSTADIPPLYL 408
D NDIDS +D +E + + + +TD + ++ + Q+ +I P+++
Sbjct: 154 DDNDIDSEGLDQNESHEDEAETIAGVTDTMFTATDFLEDNERQNILNIAPVFI 206
>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 199 EDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGV--KSITDRLSQ 348
+DE D G G++ + D+D G+ D + + + GV K + D +++
Sbjct: 403 DDEDVDDGVNKGDVDDGVNEEDVDDGVNDKGVDDGDVDDGVNDKDVDDDVNE 454
>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1589
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 187 FRNLFWHSFLVQFYTTVFNFNNNLIVSLLFILQLFMNTEP 68
F + WH L+ +++ F NL+ I+Q+F NT+P
Sbjct: 662 FIRITWHELLIGIQSSLLVFPINLL-----IIQIFRNTKP 696
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 253 DSNDIDSGMIDYDEKNSEGESGVKSITD-RLSQVMVSVQSPAQSTADIPP 399
D NDIDS +D +E + + + +TD L+ + Q+ DI P
Sbjct: 5922 DDNDIDSEGLDQNESHEDEAETIAGVTDTMLTATDFLEDNERQNILDIAP 5971
>SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08)
Length = 433
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 176 KIPKRNCARTSTLIPVLLLVKYQDRVIVMISIQG*SIMMKRIVKVKV 316
K+P + I V ++ K +DR +VM ++Q + M+K I V V
Sbjct: 245 KMPLNRLLTATVAIYVTVITKDKDRSVVMATLQALNEMLKAIGVVVV 291
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 289 DEKNSEGESGVKSIT---DRLSQVMVSVQSPAQSTADIPPLYLLFQQDEDGDTQLHXA 453
+EKN+ + + S + LS + ++ +L QDEDGDT LH A
Sbjct: 526 NEKNNSAAASLVSTQGNKESLSSTESTSGDSLETLVSASQCHLATLQDEDGDTPLHIA 583
>SB_18066| Best HMM Match : TTL (HMM E-Value=3.5e-10)
Length = 249
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +1
Query: 235 EISGPCDSNDIDSGMIDYDEKNSEG------ESGVKSITDRLSQVMVSVQ 366
E P +++DI+S + D+ E EG ES V S+T+++ Q S++
Sbjct: 3 ENEAPGENSDIESEISDHGESEVEGEGVDDFESTVPSVTEQIPQTPSSLK 52
>SB_3666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 211 ADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDRLSQVMVSVQSPAQSTAD 390
AD E GP D +D D EK +GE G KS ++++ + ++ S Q+ D
Sbjct: 687 ADRNLNPEESEGPEDDDDDMDDDDDAPEKGKKGEKG-KSFKEKMAAI-TNICSTVQNALD 744
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,289
Number of Sequences: 59808
Number of extensions: 223351
Number of successful extensions: 765
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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