Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c17f
(461 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 31 0.40
AF003140-1|ABR92609.1| 538|Caenorhabditis elegans Hypothetical ... 31 0.53
Z47358-9|CAA87434.3| 436|Caenorhabditis elegans Hypothetical pr... 30 0.93
AF045639-8|AAC02566.1| 649|Caenorhabditis elegans Hypothetical ... 30 0.93
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical pr... 27 8.6
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 27 8.6
U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine rece... 27 8.6
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 27 8.6
AC084197-8|AAG23476.1| 228|Caenorhabditis elegans Hypothetical ... 27 8.6
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 31.1 bits (67), Expect = 0.40
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 253 DSNDIDSGMIDYDEKNSEGESGVKSITDRLSQVMVSVQSPAQSTAD---IPPLYLL 411
DS+ + + + KNS+GE VK T + Q V V P + T + PP+ LL
Sbjct: 2781 DSSPLKNTWLTNTRKNSKGEKKVKENTAPVQQAPVPVSPPREETPEPTPSPPVRLL 2836
>AF003140-1|ABR92609.1| 538|Caenorhabditis elegans Hypothetical
protein C44E4.5 protein.
Length = 538
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +1
Query: 214 DSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDRLSQVMVSVQ 366
D ++G++SG D ND++ I D+K + + +KSI D+ + ++SV+
Sbjct: 294 DLTLLSGKLSGEIDENDVE---ICADQKTNSLKLKLKSIDDKKWEKLISVE 341
>Z47358-9|CAA87434.3| 436|Caenorhabditis elegans Hypothetical
protein ZK1307.7 protein.
Length = 436
Score = 29.9 bits (64), Expect = 0.93
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 262 DIDSGMIDYDEKNSEGESGVKSITDRLSQVMVSV 363
D SG + YD N +GE V+S+ L +V++SV
Sbjct: 375 DTGSGYMVYDAPNKKGERRVRSVGTGLDRVVLSV 408
>AF045639-8|AAC02566.1| 649|Caenorhabditis elegans Hypothetical
protein B0212.1 protein.
Length = 649
Score = 29.9 bits (64), Expect = 0.93
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -3
Query: 237 FTSNKTGISVLVLAQFRFGIFFGTHFWFNSIRPFSILTIILSFHYCLYYNCL*TRNHVLT 58
F S K G+S +++ ++G W +R FS LTI FH + + + +N
Sbjct: 579 FESEKAGVSEMIIE------YYGKRSWVFLVRSFSPLTIFYRFHSSVCFAEI-WKNVYAA 631
Query: 57 QKCRVINSLTTT 22
+ V NS T+T
Sbjct: 632 KTHLVHNSATST 643
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 173 KKIPKRNCARTSTLIPVLLLVKYQDRVIVMISI 271
KKI RN RTS P L+ V+ +DR + ++ +
Sbjct: 360 KKIAIRNLLRTSFKPPALVFVQSKDRAVQLVKL 392
>Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical
protein F23B12.7 protein.
Length = 953
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 160 KMSAKKDSE---TKLREDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSI 330
K + KKD E + ED+ D + E G + +D D G +D D+++ E +
Sbjct: 809 KRNKKKDVEEDDVDMDEDDDIDLNDLNEEEDGGMEDDDEDDGDMDDDDEDDEDAEDDDEV 868
Query: 331 TD 336
D
Sbjct: 869 DD 870
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily
assigned gene nameprotein 162 protein.
Length = 2643
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 115 IVSLLFILQLFMNTEPCFDTKMSRNKQPHYNECACTMR 2
+V LL LQ F + D + QPHY EC MR
Sbjct: 7 LVILLVALQGFSLVQS--DETSAEETQPHYPECVAPMR 42
>U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine
receptor, class h protein275 protein.
Length = 323
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 219 GISVLVLAQFRFGIFFGTHFWFNSIR-PFSILTIILSFHY 103
G+S++ + + R+ + F W+ +R PF I I + Y
Sbjct: 107 GVSIVSILENRYYLLFAREHWWRHVRLPFLIFNYIAACSY 146
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 151 IEPKMSAKKDSETKLREDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGE 312
+ + S+ S + R + SG+V+G +SG + D D G++ D++ E E
Sbjct: 174 VSSRSSSSISSLSTFRSPVSSTSGYVSG-VSGGAFNPDDDEGVMGDDDEEEEEE 226
>AC084197-8|AAG23476.1| 228|Caenorhabditis elegans Hypothetical
protein Y73B6BL.12 protein.
Length = 228
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 213 SVLVLAQFRFGIFFGTHFWFNS 148
SV+++ FRFG + H W NS
Sbjct: 76 SVILIRSFRFGNDYPNHMWRNS 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,625,662
Number of Sequences: 27780
Number of extensions: 179570
Number of successful extensions: 650
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -