Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c17f
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01370.1 68416.m00059 expressed protein contains Pfam domain,...    30   0.66 
At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protei...    28   3.5  
At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containi...    28   3.5  
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    27   4.7  
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ...    27   4.7  
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ...    27   4.7  
At2g15980.1 68415.m01829 pentatricopeptide (PPR) repeat-containi...    27   4.7  
At3g25130.1 68416.m03138 expressed protein                             27   6.2  
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet...    27   8.2  
At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical t...    27   8.2  

>At3g01370.1 68416.m00059 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 1011

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 256 SNDIDSGMIDYDEKNSEGESGVKSITDRLSQVMVS--VQSPAQSTADIP 396
           ++ +D G++D  EK S  ES   SIT+++ + M++  V SP +    +P
Sbjct: 272 ASSMDQGVVDSREKQSIAESSAPSITNKMVKPMLTQGVGSPDKVRFQLP 320


>At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protein
           (LTI65) / desiccation-responsive protein 29B (RD29B)
           nearly identical to SP|Q04980 Low-temperature-induced 65
           kDa protein (Desiccation-responsive protein 29B)
           {Arabidopsis thaliana}
          Length = 619

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +1

Query: 241 SGPCDSNDIDSGMIDYDEKNSE-----GESGVKSITDRLSQVMVSVQSPAQST 384
           + P   +D  SG+ +Y  K ++     GE+GV  I + L ++ V+ +SP Q +
Sbjct: 234 AAPGGGSDYLSGVSNYQSKVTDPTHKGGEAGVPEIAESLGRMKVTDESPDQKS 286


>At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 851

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 229 TGEISGPCDSNDIDSGMIDYDEKNSEGES 315
           T  I+G C +ND+ S ++ +D+   EG S
Sbjct: 343 TSLITGHCKNNDLVSALVLFDKMEKEGPS 371


>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
            protein
          Length = 1332

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 253  DSNDIDSGMIDYDEKNSEGESGVKSITDRLSQVMVSVQSPAQSTAD 390
            DSN++D    D +E   E     +SI  ++ ++    QSP +S+ D
Sbjct: 1033 DSNNVDWKSNDMEEDQGELSRAPESIKVKIPEMTSDWQSPVRSSPD 1078


>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 299

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 301 SEGESGVKSITDRLSQVMVSVQSPAQSTADIPP 399
           S G S  KSI    SQ  +S Q+PA  +A + P
Sbjct: 88  SAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120


>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
           profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
           domain;
          Length = 419

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 301 SEGESGVKSITDRLSQVMVSVQSPAQSTADIPP 399
           S G S  KSI    SQ  +S Q+PA  +A + P
Sbjct: 88  SAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120


>At2g15980.1 68415.m01829 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 498

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 238 ISGPCDSNDIDSGMIDYDEKNSEG 309
           ++G C + D+DSG++ Y E   +G
Sbjct: 358 VNGYCKAGDVDSGLVVYREMKRKG 381


>At3g25130.1 68416.m03138 expressed protein 
          Length = 406

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = -3

Query: 234 TSNKTGISVLVLAQFR-FGIFFGTH-FWFNSIRPFS-ILTIILSF 109
           +SNK G+S L+L+ F  F  F  TH F+F+ +  FS  +  ILSF
Sbjct: 14  SSNKIGLSSLLLSDFHLFCSFILTHPFYFSYLLFFSPYIFKILSF 58


>At5g27650.1 68418.m03313 PWWP domain-containing protein
           hypothetical protein F22F7.12 - Arabidopsis thaliana,
           EMBL:AC009606
          Length = 1072

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 160 KMSAKKDSETKLREDEYADSGFVTGEISGPCDSNDID--SGMIDYD 291
           K+S KKD     R DE  D     GEI    +++ I    G +D D
Sbjct: 409 KVSKKKDKYLLKRRDEAGDKSVQFGEIEASSEASHIQGIDGSLDGD 454


>At1g02280.1 68414.m00169 GTP-binding protein (TOC33) identical to
           atToc33 protein (GI:11557973) [Arabidopsis thaliana];
           Carboxyl-terminal end highly similar to GTP-binding
           protein SP:U43377, location of EST gb|AA394770 and
           gb|R30089; identical to cDNA for chloroplast atToc33
           protein GI:11557972
          Length = 297

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 187 TKLREDEYADSGF--VTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSITD 336
           +K+R+ E+ DS    V  E SG C  ND D   +   E  +   + VK+ITD
Sbjct: 190 SKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGE--AWIPNLVKAITD 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,734,796
Number of Sequences: 28952
Number of extensions: 154535
Number of successful extensions: 500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)