Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c16f
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    31   0.094
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    28   0.87 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   3.5  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    26   3.5  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   3.5  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   6.2  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   8.1  

>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 31.5 bits (68), Expect = 0.094
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
 Frame = -1

Query: 328 DWSNDNRG----GHDWLSDSTTVGKREVDDFGSEDRL---LYGVESDEDFVQMLEKESSG 170
           DW   + G    G D  SD +  G+ +VDD   ++R    L  VESD+DFV  +   +  
Sbjct: 267 DWLRFDEGEEFVGSDLESDFSGPGEYDVDDGFIDNRATSQLSPVESDDDFVAPVNGSNGN 326

Query: 169 GWVCAGAVDS----VQNGLQLSISLSGFDGASGSHS-YDSNESNEE 47
           G     + DS    + NG        G +  S S + Y+  +  +E
Sbjct: 327 GITALDSTDSEEIDIMNGFDEERDSGGTNMVSRSETCYNDGQRYDE 372


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = -1

Query: 433 IRLVNNDGLGNDSCISAWLVHVHNDLNERSGLAWCDWSND 314
           IR+V ND     S ++ W+  +  ++ +   L +CD++ +
Sbjct: 164 IRVVGNDAAEKLSILAGWISRIDRNVPDYGELTYCDFNTN 203


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/81 (24%), Positives = 29/81 (35%)
 Frame = -1

Query: 289 SDSTTVGKREVDDFGSEDRLLYGVESDEDFVQMLEKESSGGWVCAGAVDSVQNGLQLSIS 110
           SDS++       +  SED       SD +     E   S         +S   G   S S
Sbjct: 162 SDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSS 221

Query: 109 LSGFDGASGSHSYDSNESNEE 47
            S  +  S S   DS+ S+ +
Sbjct: 222 SSSSESESSSEDNDSSSSSSD 242


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 421 NNDGLGNDSCISAWLVHVHNDLNERSG 341
           N+  + +   +  W+   HND+NER G
Sbjct: 138 NSPRVDSRESLCEWICEAHNDVNERLG 164


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 307 GGHDWLSDSTTVGKREVDDFGSEDRL 230
           G H+ +  +T V +R V +FG  DR+
Sbjct: 604 GAHNDIDKATQVARRMVTEFGMSDRI 629


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 319 NDNRGGHDWLSDSTTVGKREVDDFGSEDRLLYGVESD 209
           NDN  G+D L +S+T G+   ++    D L   +E++
Sbjct: 681 NDNHEGYDLLPNSSTKGEESAENENELDDLADIMEAE 717


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 400 DSCISAWLVHVHNDLNERSGLAWCDWSNDNRG 305
           D C +A  V    DL     L  CDW ND  G
Sbjct: 473 DFCKAAG-VFCMGDLKSSDSLKVCDWQNDLEG 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,911
Number of Sequences: 5004
Number of extensions: 28917
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)