Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c09f
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 30 0.26
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 26 3.2
SPAC1782.03 |||microfibrillar-associated protein family protein|... 26 4.2
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.2
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.4
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 25 7.4
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 25 7.4
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.4
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 7.4
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 7.4
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 25 7.4
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 9.8
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 9.8
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 9.8
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 25 9.8
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 25 9.8
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 25 9.8
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 9.8
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 9.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 9.8
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 29.9 bits (64), Expect = 0.26
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -3
Query: 347 SLQSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQ 198
SLQ Q G+ H Q+ R QN+Q R R F + S LH RS+Q
Sbjct: 126 SLQLQGGDMHRQV-YRWQQEVDQNKQIRRGRSRSFSAKVSDPNLHLRSVQ 174
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 89 IKPVQIADIPIPKYESIDAGMYIIPDEVIQ---ELALAGIELSENV 217
++ + I + PIP +++D+ IIP ++ ++ +AGI NV
Sbjct: 298 VRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNV 343
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = -3
Query: 332 PGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQRCLHFRSIQSRPRRVLE*LRRG 159
P + + +LRH LR ++++ + +RE + +R ++ +++ + E RRG
Sbjct: 190 PQSEYELWKLRHLLRKKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDAEASRRG 247
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = +3
Query: 57 SHSLERRPPHQSNPSKSRISQYRN---TKA----STLECTSSPTKSFKN 182
+H RRPP Q + ++ + +N TKA S++E T SP K K+
Sbjct: 87 AHPRSRRPPRQISIDSAKKEETKNTGSTKAADTKSSVEATISPLKDTKS 135
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 382 GVLNWSIEVFYEAYRVSREIGILNWSFDIFYEVYRINREIDVVN 251
G LN++ EV +G NW D FYE Y ++ EID+V+
Sbjct: 492 GDLNYTSEVKERTSSRLSAVGSENWVDDDFYE-YLLS-EIDMVS 533
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.0 bits (52), Expect = 7.4
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -1
Query: 298 IFYEVYRINR---EIDVVNGNFNVKNRNVVYIFAQFNPGQGEFLNDFVGDDVHSSVDAFV 128
+F+ VY + V G +N R + + F G F+N FV + + A
Sbjct: 129 MFFTVYALGELAVSYPVAGGFYNYAVRFIDPAWG-FAVGWNYFMNYFVTFPLELTTCAIT 187
Query: 127 FRYW 116
FRYW
Sbjct: 188 FRYW 191
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 341 QSQPGNRHSQLELRHFLRSLQNQQGNRRCQREFQCQKSQ 225
Q +P RH L + + + +R Q+E + QKS+
Sbjct: 282 QDRPDKRHGTYSLEEIDKQRKEFENRQRLQKEKEFQKSR 320
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 228 ATLSTFSLNSIPAKASS*MTSSGMMYIPASMLSYFGI 118
AT+S++ LN+ A+S TSSG + +SYFG+
Sbjct: 530 ATVSSW-LNTPALSAASARTSSGRNSSESDRVSYFGL 565
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 278 SVNFVENVEAPVENADFPADSVSFVENLD 364
+++ +E E+P +N+D+ DSV + + D
Sbjct: 720 NIDELEKAESPQQNSDYANDSVQHLLDFD 748
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = -1
Query: 370 WSIEVFYEAYRVSREIGILNWSFDIFYEVYRINREIDVVNGNFNV 236
W + E R ++ + W FD + + + ID +GN V
Sbjct: 453 WCTNIIDEQQRNVKQTALKFWQFDSVQKTWVLMTRIDNPHGNLEV 497
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -1
Query: 289 EVYRINREIDVV-NGNFN 239
EVY INR +D + +GN+N
Sbjct: 35 EVYEINRTVDFIKSGNYN 52
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 105 SRISQYRNTKASTLECTSSPTKSFKNSP 188
S +S Y T ST TSSPTK K P
Sbjct: 841 SFLSSYLKTLESTPMSTSSPTKEEKLFP 868
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -3
Query: 266 NRRCQREFQCQKSQRCLHFRSIQSRPRRVLE*LRRG*CTFQRRCFRISVLGYPRF 102
NR R+F +KS + R+ + E LR TF+R+ ++ + Y R+
Sbjct: 239 NRATARKFVAEKSPVYMAARAAMRELSNLTEGLRVYDFTFERKYTKVERIAYSRW 293
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 217 YIFAQFNPGQGEFLNDFVGDDVHSSVDAFVFRYWDIRD 104
Y+ A F +GE +H D +F+Y D+RD
Sbjct: 334 YMDADFVNYRGEITTIKNAISIHEEDDGVLFKYSDLRD 371
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 407 SLQNQPGHRRPQLEHRGFLRSLQSQ 333
+LQ + + R +LE+ FL+S+QSQ
Sbjct: 38 TLQRKLDNSREKLEYSEFLKSVQSQ 62
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 128 YESIDAGMYIIPDEVIQELALAGIELSENVDNVAIFDIEIPVDNVD--FPVDSV 283
Y + Y++ + +E+ L + V +V +DIE + N+D FP +SV
Sbjct: 255 YVDLIFAAYLLKAGIAKEIVLHPKDFPWFVSDVLPYDIEYLLTNLDTIFPTESV 308
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 81 PHQSNPSKSRISQYRNTKASTLECTSSPTKSFKNSP 188
PH +PS+ + NT S+ +SP K+ N P
Sbjct: 443 PHSLSPSQPPVVVPSNTTISSSPPLTSPVKTSANIP 478
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 274 NREIDVVNGNFNVKNRNVV 218
++ I+ V+ NF+ KNRNVV
Sbjct: 690 SKTIENVSSNFSKKNRNVV 708
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 87 QSNPSKSRISQYRNTKASTLECTSSPTKSFK 179
+SNP K + +N +L+ SSP+K+ K
Sbjct: 123 KSNPEKHEDAVSQNRLRGSLDTVSSPSKTHK 153
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 286 VYRINREIDVVNGNFNVKNRNVVYIFAQ 203
V+ NR+I NG F+ ++RNV I A+
Sbjct: 666 VFLHNRDIAENNGVFSARSRNVATIAAK 693
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,664
Number of Sequences: 5004
Number of extensions: 44028
Number of successful extensions: 187
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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