Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c09f
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    27   0.17 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   0.89 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.3  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = -3

Query: 500 RPQLEHRRCLRS*QNQPGHRRP------QLEHRRCLRSLQNQPGHRRP 375
           +P+  H R  R  + +PG+ RP      +  H R  R  + +PG+ RP
Sbjct: 108 QPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 155



 Score = 24.2 bits (50), Expect = 0.89
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
 Frame = -3

Query: 500 RPQLEHRRCLRS*QNQ--PGHRRP------QLEHRRCLRSLQNQPGHRR------PQLEH 363
           +P+  H R  R  +++  PG+ RP      +  H R  R  + +PG+ R      P+  H
Sbjct: 80  QPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPH 139

Query: 362 RGFLRSLQSQPGN 324
               R  +++PGN
Sbjct: 140 PRLRREPEAEPGN 152


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 152 YIIPDEVIQELALA--GIELSENVDNVAIFDIEIPVDNVDFPVDS 280
           YI P+    E +L   G+E+  N D      + +  DNV  P++S
Sbjct: 153 YIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIES 197


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 350 RSLQSQPGNRHSQLE-LRHFLRSLQNQQGNRRCQRE 246
           RS Q +  + HS+ E LRH  R+     G R C R+
Sbjct: 222 RSFQ-RTSSCHSRYEDLRHEDRNSYRNDGERSCSRD 256


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 257 CQREFQCQKSQRCLHFRSIQSRPR 186
           CQR F+ Q +  CL    I +R R
Sbjct: 277 CQRRFEEQGNYSCLKVDLIFTRDR 300


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 320 HSQLELRHFLRSLQNQQG 267
           H QL  R+FL  + N  G
Sbjct: 265 HKQLMTRYFLERMSNDLG 282


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 320 HSQLELRHFLRSLQNQQG 267
           H QL  R+FL  + N  G
Sbjct: 265 HKQLMTRYFLERMSNDLG 282


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 279 ESTGKSTLSTGISMSKIATLSTFSLNSIPA 190
           E  GK+ +  G+ +S+  T   + +  +PA
Sbjct: 184 EIRGKNVVDIGVDLSEFYTSVEWDILEVPA 213


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 193 GQGEFLNDFVG 161
           G G++++DFVG
Sbjct: 264 GSGQYISDFVG 274


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 193 GQGEFLNDFVG 161
           G G++++DFVG
Sbjct: 302 GSGQYISDFVG 312


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 432 LRTPMSRLILSAS*TTSMLQLRTPIY 509
           LRTP +  +++ +     + ++TPI+
Sbjct: 79  LRTPSNMFVVNLAICDFFMMIKTPIF 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,993
Number of Sequences: 438
Number of extensions: 3221
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)