BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12c05r (649 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 227 1e-60 SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 2e-08 SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 54 2e-08 SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.4 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.4 SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.1 SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.1 SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 7.1 SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.1 SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 9.4 SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 9.4 SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.4 >SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces pombe|chr 2|||Manual Length = 259 Score = 227 bits (554), Expect = 1e-60 Identities = 108/214 (50%), Positives = 142/214 (66%), Gaps = 1/214 (0%) Frame = -2 Query: 648 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 469 QP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA +FK+L KYRPE Sbjct: 41 QPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPE 100 Query: 468 TXXXXXXXXXXXXXXXXXXXXXXXXKR-PNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPI 292 T + P ++ G N V L+E KKA+LV+IA DVDPI Sbjct: 101 TAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPI 160 Query: 291 ELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKT 112 ELV+FLPALC+KMGVPY IVK K+RLG ++H+KT LA+T V D+ + +V A+ Sbjct: 161 ELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDA 220 Query: 111 NFNERYEELRKHWGGGVLGNKSNARIAKLEKAKA 10 NF+ +Y+E R+ WGGG++G K+ A +AK KA A Sbjct: 221 NFSAKYDESRRKWGGGIMGGKTQALLAKRAKAAA 254 >SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosaccharomyces pombe|chr 1|||Manual Length = 125 Score = 54.0 bits (124), Expect = 2e-08 Identities = 23/56 (41%), Positives = 34/56 (60%) Frame = -2 Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 211 +R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87 >SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 154 Score = 54.0 bits (124), Expect = 2e-08 Identities = 33/100 (33%), Positives = 47/100 (47%) Frame = -2 Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 199 I G V K V K + LV++A D+ P++++ +P LC VPY K LG + Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113 Query: 198 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 79 K T + V G + SKV E + E YEE+ K Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147 >SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Par2|Schizosaccharomyces pombe|chr 1|||Manual Length = 627 Score = 25.8 bits (54), Expect = 5.4 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 585 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 484 KAVL LK P IN F + L + +F++LE Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 25.8 bits (54), Expect = 5.4 Identities = 8/9 (88%), Positives = 8/9 (88%) Frame = +3 Query: 357 LCLCRIGWC 383 LCLC IGWC Sbjct: 2326 LCLCYIGWC 2334 >SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 25.4 bits (53), Expect = 7.1 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 601 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 512 PHP SA S ++P P+ P T +DY Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382 >SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Manual Length = 462 Score = 25.4 bits (53), Expect = 7.1 Identities = 16/57 (28%), Positives = 24/57 (42%) Frame = +1 Query: 403 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 573 L F L +S Q FP FS L+NL + ++ Q L + R +T+ Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253 >SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1317 Score = 25.4 bits (53), Expect = 7.1 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Frame = +3 Query: 153 HQTPHLLELSMCMSCGVQVHRGGTCP*QCSMV-HPFYGIT 269 H HL +S C+ ++H G P + HP YG T Sbjct: 803 HMPVHLGSMSTCVRTQAKIHEGKLKPGDVLVTNHPSYGGT 842 >SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 941 Score = 25.4 bits (53), Expect = 7.1 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = -2 Query: 375 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 253 +SG+ +T+ + +V I + +D +E LP LC K+ Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418 >SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 372 Score = 25.0 bits (52), Expect = 9.4 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -1 Query: 244 ILHCQGQVPPRCTCTPQDMHMLSSNKC 164 +LHC + RC C P+++ + S++ C Sbjct: 333 LLHCPRK--GRCFCKPEEIDLSSNSSC 357 >SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||Manual Length = 468 Score = 25.0 bits (52), Expect = 9.4 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -2 Query: 138 SKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAK 13 +K+ EA K FNE E+L GGG L K+ A+L+ + Sbjct: 23 AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIR 63 >SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 231 Score = 25.0 bits (52), Expect = 9.4 Identities = 9/13 (69%), Positives = 13/13 (100%) Frame = -2 Query: 513 TAKGLFKILEKYR 475 TA+GL+K+LEKY+ Sbjct: 94 TAQGLYKMLEKYK 106 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,279,552 Number of Sequences: 5004 Number of extensions: 41017 Number of successful extensions: 135 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 134 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 291768710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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