Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c05r
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             269   1e-72
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       197   7e-51
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        58   8e-09
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          45   5e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               35   0.066
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         31   0.81 
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)                28   5.7  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           28   5.7  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   5.7  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   27   9.9  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  269 bits (660), Expect = 1e-72
 Identities = 123/215 (57%), Positives = 157/215 (73%)
 Frame = -2

Query: 648 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 469
           QP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPE
Sbjct: 46  QPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPE 105

Query: 468 TXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 289
           T                        K+P  ++ G N +T LVE KKAQLVVIAHDVDPIE
Sbjct: 106 TKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIE 165

Query: 288 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTN 109
           +V++LPALCRKM VPYCIVKGK+RLG +VH+K  T L +T V   D+ S + ++E++KTN
Sbjct: 166 IVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTN 225

Query: 108 FNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 4
           +NER++E+RKHWGGG++G KS A  AK+EKAK RE
Sbjct: 226 YNERFDEIRKHWGGGIMGPKSLAATAKVEKAKLRE 260


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  197 bits (480), Expect = 7e-51
 Identities = 91/166 (54%), Positives = 116/166 (69%)
 Frame = -2

Query: 501 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQL 322
           LFK+L KYRPET                        K+P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 321 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAS 142
           VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K  T L +T V   D+ S
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNS 123

Query: 141 FSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 4
            + ++E++KTN+NER++E+RKHWGGG++G KS A  AK+EKAK RE
Sbjct: 124 LNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKVEKAKLRE 169


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -2

Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 205
           +R G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153

Query: 204 VHRKTCTCLALTNVESGDRASFSKVVEAIK 115
           V R    C    N  S  +     +  AI+
Sbjct: 154 VTRPVIACAVTVNEGSQLKPQIQTLQNAIE 183


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -2

Query: 390 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 223
           +  T+R G   V K + K +   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -2

Query: 369 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 211
           G +   K ++K++A L +++++ D    V  + ALC + G+P   V    +LG
Sbjct: 41  GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93


>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = -2

Query: 270  ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 91
            A C++    + +++GK +  AL+ +KT   L +  V    R S + VV+   ++ +E+Y 
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263

Query: 90   EL 85
            ++
Sbjct: 1264 DI 1265


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -2

Query: 234  VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 85
            VKGK+ LG    +KT   L +  V    R S S VVEA  ++  E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137


>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 243 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 85
           + +++GK +  AL+ +KT   L +  V      S S VVEA  ++  E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388


>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
          Length = 189

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 59  RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 166
           R    + +RS S RSL   L  ST+ EKEA+  D+T
Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 134 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 235
           F     + +S   R +H H+ RCTSAP    P T
Sbjct: 61  FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 388 PLWWRLIFLGNLSFSSFPQPLFPG 459
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 577 TSASSESAPSDQPIYPDTG 521
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 630 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 481
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 153 DRASFSKVVEAIKTNFNERYEELRKHWGG 67
           DRAS+  + EA + +  ER EEL K W G
Sbjct: 635 DRASYYNMAEAAEVS--ERVEELVKQWRG 661


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,169,656
Number of Sequences: 59808
Number of extensions: 340586
Number of successful extensions: 1231
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)