Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c05r
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 252 1e-67
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 241 4e-64
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 94 9e-20
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 73 1e-13
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 7e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 8e-06
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.025
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 2.8
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 28 6.6
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 27 8.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 252 bits (618), Expect = 1e-67
Identities = 114/215 (53%), Positives = 156/215 (72%)
Frame = -2
Query: 648 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 469
QP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE
Sbjct: 47 QPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPE 106
Query: 468 TXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 289
+ KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E
Sbjct: 107 STEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLE 166
Query: 288 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTN 109
+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE + N
Sbjct: 167 IVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNN 226
Query: 108 FNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 4
F+ER+EE+RKHWGGGV+ KS+A+ K+E+A+AR+
Sbjct: 227 FSERHEEIRKHWGGGVMSAKSDAKKLKIERARARD 261
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 241 bits (589), Expect = 4e-64
Identities = 113/215 (52%), Positives = 155/215 (72%)
Frame = -2
Query: 648 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 469
QP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE
Sbjct: 47 QPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPE 106
Query: 468 TXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 289
+ RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E
Sbjct: 107 STEVTK--------------------RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLE 146
Query: 288 LVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTN 109
+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE + N
Sbjct: 147 IVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNN 206
Query: 108 FNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 4
F+ER+EE+RKHWGGGV+ KS+A+ K+E+A+AR+
Sbjct: 207 FSERHEEIRKHWGGGVMSAKSDAKKLKIERARARD 241
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 93.9 bits (223), Expect = 9e-20
Identities = 39/61 (63%), Positives = 51/61 (83%)
Frame = -2
Query: 648 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 469
QP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE
Sbjct: 150 QPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPE 209
Query: 468 T 466
+
Sbjct: 210 S 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 73.3 bits (172), Expect = 1e-13
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = -2
Query: 648 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 520
QP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 150 QPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 7e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -2
Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 205
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 204 VHRKTCTCLALTNVESGDRASFSKVVEAIK 115
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -2
Query: 381 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 202
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 201 HRKTCTCLALTNVESGDRASFSKVVEAIK 115
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +1
Query: 424 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 543
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 35 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 184
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 35 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 184
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 35 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 184
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 35 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 184
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 35 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 184
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +2
Query: 101 SLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPILRHNAGRK 280
SL+F+ S+ EK + +P + L + +PL ++ TP+L A +
Sbjct: 121 SLRFLSQLSSVAEKVS-TPSEAADTSSSSPSLNLNTTSSNSVPLAFKFSTPLLESLASDQ 179
Query: 281 RTSSIGS 301
++SS S
Sbjct: 180 QSSSTSS 186
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 551 LRSTNLPRHWTRLQLRA 501
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 116 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 256
L+ T E +S D F V V TS+P +D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,681
Number of Sequences: 27780
Number of extensions: 252780
Number of successful extensions: 852
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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