Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12c05r
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 257 4e-69
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 254 5e-68
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 54 8e-08
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 2e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 2e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 1e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.023
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.023
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.041
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.041
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.041
At1g49870.1 68414.m05591 expressed protein ; expression supporte... 30 1.2
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 3.5
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.5
At4g19060.1 68417.m02808 disease resistance protein-related cont... 27 8.1
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 8.1
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 257 bits (630), Expect = 4e-69
Identities = 121/214 (56%), Positives = 155/214 (72%)
Frame = -2
Query: 645 PTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 466
P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 39 PKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPED 98
Query: 465 XXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIEL 286
+P ++ G N VT L+E+ KAQLVVIAHDVDPIEL
Sbjct: 99 KAAKKERLVKKAQAEAEGKPSESK-KPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIEL 157
Query: 285 VLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNF 106
V++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V++ D+ FSK++EAIK NF
Sbjct: 158 VVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANF 217
Query: 105 NERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 4
N++YEE RK WGGG++G+KS A+ E+ A+E
Sbjct: 218 NDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKE 251
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 254 bits (621), Expect = 5e-68
Identities = 121/214 (56%), Positives = 153/214 (71%)
Frame = -2
Query: 645 PTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 466
P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 38 PKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPED 97
Query: 465 XXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIEL 286
+P ++ G N VT L+E+ KAQLVVIAHDVDPIEL
Sbjct: 98 KAAKKERLLNKAQAEAEGKPAESK-KPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIEL 156
Query: 285 VLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNF 106
V++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V++ D+ FSK++EAIK NF
Sbjct: 157 VVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANF 216
Query: 105 NERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 4
N++YEE RK WGGG++G+KS A+ E+ A+E
Sbjct: 217 NDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKE 250
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 54.0 bits (124), Expect = 8e-08
Identities = 26/100 (26%), Positives = 51/100 (51%)
Frame = -2
Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 199
++ G V K + + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110
Query: 198 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 79
K TC L ++ ++ + +KT++ + +++++
Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -2
Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 205
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 204 VHRKTCTCLALTNVESGDRASFSKVVEAIK 115
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -2
Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 205
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 204 VHRKTCTCLALTNVESGDRASFSKVVEAIK 115
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -2
Query: 378 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 205
++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94
Query: 204 VHRKTCTCLALTNVESGDRASFSKVVEAIK 115
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -2
Query: 360 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 187
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132
Query: 186 TCLALTNVESGDRASFSKVVEAIK 115
C +N S ++ + +AI+
Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -2
Query: 369 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 211
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -2
Query: 369 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 211
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 369 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 211
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 369 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 211
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 369 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 211
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At1g49870.1 68414.m05591 expressed protein ; expression supported
by MPSS
Length = 828
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 114 TNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKA 10
T R E+++ WGG LGN ++KLE+ KA
Sbjct: 780 TRRQARDREMQEAWGGLDLGNSIRPSLSKLEREKA 814
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 373 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 531
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 235 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 71
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 150 RASFSKVVEAIKTNFNERYEE 88
++ F K +E IK++FNE YE+
Sbjct: 18 KSEFDKELEKIKSSFNEEYEK 38
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 412 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 507
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,391
Number of Sequences: 28952
Number of extensions: 239081
Number of successful extensions: 848
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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