Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c04r
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73740.1 68414.m08538 glycosyl transferase family 28 protein ...    29   3.6  
At3g27785.1 68416.m03466 myb family transcription factor (MYB118...    28   6.2  
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof...    28   6.2  

>At1g73740.1 68414.m08538 glycosyl transferase family 28 protein
           similar to
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)-
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase GB:O07670 [SP|O07670] from Enterococcus
           hirae, ]SP|O07109] from Enterococcus faecalis; contains
           Pfam profile PF04101: Glycosyltransferase family 28
           C-terminal domain
          Length = 431

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = +2

Query: 470 FSSISTRNNHEAIPFLCYVQ-LNNSLAVREVTYVQ*CLIRSLKISIL-----HALFEISY 631
           FS+IST  +  + PFLC+   L   L + + T+    ++R LK  I+     HA F + +
Sbjct: 106 FSTISTVGSSSSRPFLCFTSFLKFPLRLIQSTFESYKILRELKPQIVIGTGGHASFPVCF 165

Query: 632 A 634
           A
Sbjct: 166 A 166


>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
           contains PFAM profile: PF00249 myb-like DNA binding
           domain
          Length = 437

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +1

Query: 118 LLSAAKKTVLNRMQNVYVLLHNMIIKCGKNKNKA*QIFEIAK 243
           LLSA + T++NR QN  V++    I   K KNK  Q+  I K
Sbjct: 142 LLSANEDTIMNRRQNNQVMIKTEQI---KKKNKRFQMRRICK 180


>At1g32660.1 68414.m04028 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 446

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 433 CYSNFIMWLLQILFKHQYKKQS 498
           C S+F+ W+L+   KH++ +QS
Sbjct: 322 CISSFVFWILEDPKKHEWSRQS 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,588
Number of Sequences: 28952
Number of extensions: 255329
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)