Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c01f
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.47 
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   1.9  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   3.3  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   3.3  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   5.8  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   7.7  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   7.7  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    25   7.7  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 348 INVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPE 458
           I+ N P+  A+ P+  E + EEPLP    LP    PE
Sbjct: 80  ISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPE 116


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 389 NGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKS-RSDGDGLVGV 213
           NG S +       ++D+   S +   D    +FN+ R  R     VN   RSD D L+G+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRE-RFLTEHVNMDERSDDDFLLGL 252

Query: 212 NKSRSNRDGH 183
             S S+ D H
Sbjct: 253 ISSDSSVDDH 262


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 354 VNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFPEN 461
           ++ P++ A+  V  E   E+P+P  V+ P PV   N
Sbjct: 200 LSSPTQGASSNVTPESPPEKPIPSFVLSPPPVSATN 235


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 228 ISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIII 350
           +S G  + D + P   G A++  A   V+GAD  P++  ++
Sbjct: 164 VSSGGVMADLWCPAQRGTALIFYAFFVVSGADFGPIISSLV 204


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 455 RKYG-SGENNNFGQRLFGNVLN--INGISGNLGRTVHVDDDLDEGSA 324
           R+YG  G N +    L   ++N  + G   +L RTV+V+ D+DE  A
Sbjct: 461 RRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHL-RTVYVEHDIDESEA 506


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 369 EIAADPVDVEDIAEEPLPEVVILPTPVFPEN 461
           E+   P D+E I E  +PE V+     FPEN
Sbjct: 285 ELLFSPSDIE-IREAGIPEAVMQSVTHFPEN 314


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 359 VHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGD 228
           +HVD +  +GSA+          +  R++ DGL  VN + + G+
Sbjct: 248 LHVDHETGDGSAVGRAILLDDVIDRLRNSPDGLENVNITFNIGE 291


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 321 DGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPEVVILPTPVFP 455
           DG P  +     + P+E    P +   IA  P+P ++    P  P
Sbjct: 524 DGLPRYEEATRPSSPTESVEIPSNTTTIAPSPVPTIIAPALPSTP 568


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 323 ISAGDSHRGTFNNGRSNRDGLVGVNKSRS----DGDGLVGVNKS 204
           +  GD  +GTF+ G+    G V +   R+    DG  LV V+KS
Sbjct: 100 VDVGDQFKGTFSPGQWAILGSVNLGSWRTEMNIDGRSLVPVDKS 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,293
Number of Sequences: 5004
Number of extensions: 37692
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)