SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12c01f
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.23 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.23 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.30 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   0.70 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    25   0.70 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.70 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.6  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 417 LPEVVILPTPVFPENRRS*TRGAPQPCPPRSRQARNCWYPYHPGSR 554
           LP ++++  P +       + G       R ++ + C+YPYHP ++
Sbjct: 353 LPRLLVMRRPQYKFETNRYSSGRVLMRTVRGKE-KTCYYPYHPSTQ 397


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 417 LPEVVILPTPVFPENRRS*TRGAPQPCPPRSRQARNCWYPYHPGSR 554
           LP ++++  P +       + G       R ++ + C+YPYHP ++
Sbjct: 353 LPRLLVMRRPQYKFETNRYSSGRVLMRTVRGKE-KTCYYPYHPSTQ 397


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 329 SAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRD 189
           S I+AG+++    NN  +N +     N +  +G+G  G + + +N D
Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGNG-NGASNNNNNGD 271


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 434 NNNFGQRLFGNVLNINGI 381
           NNN+ ++L+ N++NI  I
Sbjct: 105 NNNYNKKLYYNIINIEQI 122


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 434 NNNFGQRLFGNVLNINGI 381
           NNN+ ++L+ N++NI  I
Sbjct: 105 NNNYNKKLYYNIINIEQI 122


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 434 NNNFGQRLFGNVLNINGI 381
           NNN+ ++L+ N++NI  I
Sbjct: 325 NNNYNKKLYYNIINIEQI 342


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = +3

Query: 354 VNRPSEIAADPVDVEDI-AEEPLPEVVILPTPVFPENRRS*TRGA--PQPCPPRSRQARN 524
           + R +E+ A+P +   +   +P P    L     PE      R    PQP PP  R  R 
Sbjct: 87  LRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 146

Query: 525 CWYPYHPGS 551
                 PG+
Sbjct: 147 AELEAEPGN 155



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = +3

Query: 354 VNRPSEIAADPVDVEDI-AEEPLPEVVILPTPVFPENRRS*TRGA--PQPCPPRSRQARN 524
           + R +E+ A+P +   +   +P P    L     PE      R    PQP PP  R  R 
Sbjct: 143 LRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 202

Query: 525 CWYPYHPGS 551
                 PG+
Sbjct: 203 AEPEAEPGN 211



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 486 PQPCPPRSRQARNCWYPYHPGS 551
           PQP PP  R  R       PG+
Sbjct: 78  PQPRPPHPRLRREAELEAEPGN 99


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 334  RGVPSAPVTVTGAPSTMAGP 275
            R VPSA + V   P   AGP
Sbjct: 990  RSVPSAELIVRTEPQRPAGP 1009


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 334  RGVPSAPVTVTGAPSTMAGP 275
            R VPSA + V   P   AGP
Sbjct: 986  RSVPSAELIVRTEPQRPAGP 1005


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 486 PQPCPPRSRQARNCWYPYHPGS 551
           PQP PP  R  R       PG+
Sbjct: 79  PQPRPPHPRLRREAESEAEPGN 100


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381
           +  Y +  N N+ +  + N++NI  I
Sbjct: 94  YNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381
           +  Y +  N N+ +  + N++NI  I
Sbjct: 94  YNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381
           +  Y +  N N+ +  + N++NI  I
Sbjct: 94  YNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381
           +  Y +  N N+ +  + N++NI  I
Sbjct: 94  YNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381
           +  Y +  N N+ +  + N++NI  I
Sbjct: 94  YNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381
           +  Y +  N N+ +  + N++NI  I
Sbjct: 94  YNNYNNNYNTNYKKLQYYNIINIEQI 119


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381
           +  Y +  N N+ +  + N++NI  I
Sbjct: 98  YNNYNNNYNTNYKKLQYYNIINIEQI 123


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381
           +  Y +  N N+ +  + N++NI  I
Sbjct: 94  YNNYNNNYNTNYKKLQYYNIINIEQI 119


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 165 ALVDTYVPISVGPALVDTYEPISV 236
           ++V T++ +   PAL D  +PI +
Sbjct: 497 SIVGTFIILCEAPALRDNTKPIDM 520


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,590
Number of Sequences: 438
Number of extensions: 3180
Number of successful extensions: 35
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -