BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12c01f (563 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.23 DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.23 AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 26 0.30 DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 25 0.70 DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 25 0.70 AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 25 0.70 X72577-1|CAA51169.1| 283|Apis mellifera Apidaecin precursor pro... 24 1.2 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 4.9 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 4.9 X72575-1|CAA51167.1| 168|Apis mellifera Apidaecin precursor pro... 21 8.6 DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 8.6 DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 8.6 DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 8.6 DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 8.6 DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 8.6 DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 8.6 DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 8.6 DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 8.6 AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 8.6 >DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 26.2 bits (55), Expect = 0.23 Identities = 11/46 (23%), Positives = 23/46 (50%) Frame = +3 Query: 417 LPEVVILPTPVFPENRRS*TRGAPQPCPPRSRQARNCWYPYHPGSR 554 LP ++++ P + + G R ++ + C+YPYHP ++ Sbjct: 353 LPRLLVMRRPQYKFETNRYSSGRVLMRTVRGKE-KTCYYPYHPSTQ 397 >DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 26.2 bits (55), Expect = 0.23 Identities = 11/46 (23%), Positives = 23/46 (50%) Frame = +3 Query: 417 LPEVVILPTPVFPENRRS*TRGAPQPCPPRSRQARNCWYPYHPGSR 554 LP ++++ P + + G R ++ + C+YPYHP ++ Sbjct: 353 LPRLLVMRRPQYKFETNRYSSGRVLMRTVRGKE-KTCYYPYHPSTQ 397 >AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. Length = 652 Score = 25.8 bits (54), Expect = 0.30 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = -1 Query: 329 SAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRD 189 S I+AG+++ NN +N + N + +G+G G + + +N D Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGNG-NGASNNNNNGD 271 >DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 24.6 bits (51), Expect = 0.70 Identities = 8/18 (44%), Positives = 14/18 (77%) Frame = -1 Query: 434 NNNFGQRLFGNVLNINGI 381 NNN+ ++L+ N++NI I Sbjct: 105 NNNYNKKLYYNIINIEQI 122 >DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 24.6 bits (51), Expect = 0.70 Identities = 8/18 (44%), Positives = 14/18 (77%) Frame = -1 Query: 434 NNNFGQRLFGNVLNINGI 381 NNN+ ++L+ N++NI I Sbjct: 105 NNNYNKKLYYNIINIEQI 122 >AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex determiner protein. Length = 406 Score = 24.6 bits (51), Expect = 0.70 Identities = 8/18 (44%), Positives = 14/18 (77%) Frame = -1 Query: 434 NNNFGQRLFGNVLNINGI 381 NNN+ ++L+ N++NI I Sbjct: 325 NNNYNKKLYYNIINIEQI 342 >X72577-1|CAA51169.1| 283|Apis mellifera Apidaecin precursor protein. Length = 283 Score = 23.8 bits (49), Expect = 1.2 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Frame = +3 Query: 354 VNRPSEIAADPVDVEDI-AEEPLPEVVILPTPVFPENRRS*TRGA--PQPCPPRSRQARN 524 + R +E+ A+P + + +P P L PE R PQP PP R R Sbjct: 87 LRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 146 Query: 525 CWYPYHPGS 551 PG+ Sbjct: 147 AELEAEPGN 155 Score = 23.0 bits (47), Expect = 2.1 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Frame = +3 Query: 354 VNRPSEIAADPVDVEDI-AEEPLPEVVILPTPVFPENRRS*TRGA--PQPCPPRSRQARN 524 + R +E+ A+P + + +P P L PE R PQP PP R R Sbjct: 143 LRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRRE 202 Query: 525 CWYPYHPGS 551 PG+ Sbjct: 203 AEPEAEPGN 211 Score = 21.4 bits (43), Expect = 6.5 Identities = 9/22 (40%), Positives = 10/22 (45%) Frame = +3 Query: 486 PQPCPPRSRQARNCWYPYHPGS 551 PQP PP R R PG+ Sbjct: 78 PQPRPPHPRLRREAELEAEPGN 99 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 21.8 bits (44), Expect = 4.9 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -2 Query: 334 RGVPSAPVTVTGAPSTMAGP 275 R VPSA + V P AGP Sbjct: 990 RSVPSAELIVRTEPQRPAGP 1009 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 21.8 bits (44), Expect = 4.9 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = -2 Query: 334 RGVPSAPVTVTGAPSTMAGP 275 R VPSA + V P AGP Sbjct: 986 RSVPSAELIVRTEPQRPAGP 1005 >X72575-1|CAA51167.1| 168|Apis mellifera Apidaecin precursor protein. Length = 168 Score = 21.0 bits (42), Expect = 8.6 Identities = 9/22 (40%), Positives = 10/22 (45%) Frame = +3 Query: 486 PQPCPPRSRQARNCWYPYHPGS 551 PQP PP R R PG+ Sbjct: 79 PQPRPPHPRLRREAESEAEPGN 100 >DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.0 bits (42), Expect = 8.6 Identities = 7/26 (26%), Positives = 14/26 (53%) Frame = -1 Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381 + Y + N N+ + + N++NI I Sbjct: 94 YNNYNNNYNTNYKKLQYYNIINIEQI 119 >DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.0 bits (42), Expect = 8.6 Identities = 7/26 (26%), Positives = 14/26 (53%) Frame = -1 Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381 + Y + N N+ + + N++NI I Sbjct: 94 YNNYNNNYNTNYKKLQYYNIINIEQI 119 >DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.0 bits (42), Expect = 8.6 Identities = 7/26 (26%), Positives = 14/26 (53%) Frame = -1 Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381 + Y + N N+ + + N++NI I Sbjct: 94 YNNYNNNYNTNYKKLQYYNIINIEQI 119 >DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.0 bits (42), Expect = 8.6 Identities = 7/26 (26%), Positives = 14/26 (53%) Frame = -1 Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381 + Y + N N+ + + N++NI I Sbjct: 94 YNNYNNNYNTNYKKLQYYNIINIEQI 119 >DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.0 bits (42), Expect = 8.6 Identities = 7/26 (26%), Positives = 14/26 (53%) Frame = -1 Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381 + Y + N N+ + + N++NI I Sbjct: 94 YNNYNNNYNTNYKKLQYYNIINIEQI 119 >DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.0 bits (42), Expect = 8.6 Identities = 7/26 (26%), Positives = 14/26 (53%) Frame = -1 Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381 + Y + N N+ + + N++NI I Sbjct: 94 YNNYNNNYNTNYKKLQYYNIINIEQI 119 >DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 21.0 bits (42), Expect = 8.6 Identities = 7/26 (26%), Positives = 14/26 (53%) Frame = -1 Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381 + Y + N N+ + + N++NI I Sbjct: 98 YNNYNNNYNTNYKKLQYYNIINIEQI 123 >DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex determiner protein. Length = 181 Score = 21.0 bits (42), Expect = 8.6 Identities = 7/26 (26%), Positives = 14/26 (53%) Frame = -1 Query: 458 FRKYGSGENNNFGQRLFGNVLNINGI 381 + Y + N N+ + + N++NI I Sbjct: 94 YNNYNNNYNTNYKKLQYYNIINIEQI 119 >AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic acetylcholine receptorApisa2 subunit protein. Length = 541 Score = 21.0 bits (42), Expect = 8.6 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = +3 Query: 165 ALVDTYVPISVGPALVDTYEPISV 236 ++V T++ + PAL D +PI + Sbjct: 497 SIVGTFIILCEAPALRDNTKPIDM 520 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 135,590 Number of Sequences: 438 Number of extensions: 3180 Number of successful extensions: 35 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 35 length of database: 146,343 effective HSP length: 54 effective length of database: 122,691 effective search space used: 16317903 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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