Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b22r
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    29   0.65 
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    28   1.1  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   3.5  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    27   3.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.6  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    26   4.6  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.1  
SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   8.0  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   8.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.0  

>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 570 AHCIIDDAVGVWRVRVG-STWGNSGGVVHH-VNRHIIHPNYGRWSRDNDIAIM 418
           A C  DD + VW +  G +T    G ++H+      +HP   + S D+D+ ++
Sbjct: 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHPCMIQPSMDSDVFVL 314


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -3

Query: 684 TTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDD 550
           TT+ +   +  L +T  W +W+   G+ IL++ + +     +I D
Sbjct: 136 TTVYQISVVLLLCLTMGWKSWTSASGAVILSSSTRMLPVFMVIWD 180


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 202 CDGITTIPRPADALVYDPDLDVTKLLRE*AAEPSDSPASRPNHLVVAQVV 351
           C+G T  PRP+        + V+ LL E A        + P  L   Q V
Sbjct: 73  CEGYTHFPRPSGTFTASRRIPVSSLLSEPAPHGLAGQPTHPTFLYYIQSV 122


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 522 GSTWGNSGGVVHHVNRHIIHPNYGRWSRDNDIAIMRTS 409
           GS  GN GG++   N  I HP     SR+   +  RT+
Sbjct: 175 GSDMGNDGGMIPTFNHPIFHPE--NRSRNEQASANRTN 210


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 576  TAAHCIIDDAVGVWRVRVGSTWGNSGGVVHHVNRHII 466
            T+A C+ +    +W++R  +T+G      H +N+ +I
Sbjct: 1347 TSAQCVTE-IWNLWKLRTKATFGGQHDFQHCINKRLI 1382


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 191 FALAGWTLAVATHAPVTLE 135
           FA+AGW++A+    P+ +E
Sbjct: 249 FAIAGWSVAIKNGMPIAIE 267


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 386 MLCNRPAFLDQTTTWATTRWFGRLAG---ESLGSAAHSLSNF 270
           ++C+RP   +  TTW     F R+ G   ESL  +  S SN+
Sbjct: 47  IVCSRPIVDENVTTWPENEGF-RIEGTLLESLVESVTSASNY 87


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -3

Query: 693 GSTTTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDDAVG 541
           G TT+ N++P+ +  + +  +    ++C + I N  +V T +  +ID + G
Sbjct: 114 GPTTSKNKHPSHSNTIRSPPYKVKKESCHTEINNVSNVSTESINVIDASRG 164


>SPBC17A3.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 119

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 222 YGGNTITNNMLCAGWLDVGGRDSCTGD 142
           YGG  +   +LC G+  +GG    +GD
Sbjct: 40  YGGPFVPGCLLCGGFNAIGGLAIASGD 66


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 303 TRFGGSLSEQLRHVQVWVVNQSVCRSR 223
           + FGGSL  +  H + W     +C+SR
Sbjct: 818 SNFGGSLHFEYHHEKYWPQLVELCKSR 844


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 161 ATHAPVTLEVRFITTTWSLV*ALSEITAVMPATLAS 54
           A H P T    F+   W +    S +T+  P+  AS
Sbjct: 260 AFHQPATTGSSFVADKWKMPMFTSNVTSAQPSARAS 295


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 196 HALRWLAGRWRSRL 155
           HAL WLAG W +++
Sbjct: 65  HALFWLAGEWNTKV 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,550
Number of Sequences: 5004
Number of extensions: 59561
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)