Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b22r
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690 33 0.29
02_02_0572 + 11667455-11670783,11672026-11672419 31 0.90
10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782 30 1.6
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113... 29 3.6
12_01_0016 + 125052-127145 29 4.8
11_01_0016 + 126373-128004 29 4.8
09_04_0528 - 18348071-18348136,18348477-18351209 29 4.8
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 29 4.8
09_06_0287 + 22047404-22048409,22048754-22049967 28 6.3
06_01_0769 - 5745324-5746970 28 6.3
04_04_1538 + 34239913-34241274,34241468-34241578 28 6.3
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 28 6.3
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 28 6.3
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 28 8.4
07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922 28 8.4
>08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690
Length = 392
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 342 GDNQVVWAAGWGVTRFGGSLSEQLRHVQVWVVNQSVCRSR 223
G N W +G++RFGG L H WV +CRSR
Sbjct: 319 GINGRSWNMFFGISRFGGRCLGNLIHGMSWVCVGHLCRSR 358
>02_02_0572 + 11667455-11670783,11672026-11672419
Length = 1240
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 45 RERRRQGSGHDRSYFRKSSHQRPRCCDKA---DLQSHRCMSRDRQR 173
R+ R G HDRS+ R H R R D+A D Q R RDR +
Sbjct: 172 RDYERGGRDHDRSHGRDRDHGRDRDRDRACDGDRQRGRDYGRDRDQ 217
>10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782
Length = 379
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 660 IAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDDAVGVWRVRVG 520
+ L TR+W+ +S+L + + AH + DD G+W+ G
Sbjct: 116 VQRLQTTRHWACIDALSVASVLLSGDLDATAHALADDGAGLWKKLAG 162
>12_02_1039 +
25610200-25610538,25611022-25611143,25611243-25611390,
25611681-25611818,25612106-25612165,25612234-25612392,
25612714-25612912,25613156-25613260,25613339-25613475,
25613812-25614037,25614119-25614282,25614408-25614524,
25614622-25614864,25614959-25615054,25615270-25615287
Length = 756
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -1
Query: 563 VSSTTQLASGEFESVQLGATVAAWCI 486
+S++TQ SG E+ +LGA +AA CI
Sbjct: 507 LSTSTQALSGSHEAEELGAILAAACI 532
>12_01_0016 + 125052-127145
Length = 697
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 262 DVTKLLRE*AAEPSDSPASRPNHLVVAQVV 351
DV +LR E SPASRP+H+ V+
Sbjct: 369 DVVAMLRAMRREGETSPASRPDHVTYTTVI 398
>11_01_0016 + 126373-128004
Length = 543
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 262 DVTKLLRE*AAEPSDSPASRPNHLVVAQVV 351
DV +LR E SPASRP+H+ V+
Sbjct: 215 DVVAMLRAMRREGETSPASRPDHVTYTTVI 244
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Frame = -3
Query: 450 RWSRDNDIAIMRTSSNINYVNNAVQPARIPGSNYNLGDNQVVWAAGWGVTRFGGSLSE-- 277
RW+R I +N N + Q +PG +Y++ DN++V T E
Sbjct: 148 RWTRPLSSGIYVPPTNYN----SEQQLYLPGYDYSINDNELVGIDKNRQTLIESLRLEDC 203
Query: 276 QLRHVQVW----VVNQSVCRSRYGGNTITNNMLCAGWL 175
LR + VW + ++ Y I +N C WL
Sbjct: 204 SLRIIAVWGMGGLGKSTLVNDIYKNEAIVSNFNCHAWL 241
>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
Length = 138
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 309 PSQPPKPPGCRPGCSLIQECGPVAQ 383
P PP PP C PGC+ C P Q
Sbjct: 93 PPCPPPPPPCCPGCN---SCRPACQ 114
>09_06_0287 + 22047404-22048409,22048754-22049967
Length = 739
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 258 LGRDEVAQRVSRRTE*LPSQPPKPPGC-RPGCSLIQECGPVAQHCSRS 398
+GRD R+ RR P QPP P G P LI E G VA+ SRS
Sbjct: 204 VGRDSYQVRL-RRLNPSPPQPPPPQGAGDPTVVLIAEQGWVAE-ASRS 249
>06_01_0769 - 5745324-5746970
Length = 548
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -3
Query: 546 VGVWRVRVGSTWGNSGGVVHHVNRHIIHPNYGRW 445
V +R + + G V HH+ R++ HP W
Sbjct: 291 VPAYRAELDRMFPAKGSVFHHLGRYLFHPGNRAW 324
>04_04_1538 + 34239913-34241274,34241468-34241578
Length = 490
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/87 (27%), Positives = 36/87 (41%)
Frame = +3
Query: 255 RLGRDEVAQRVSRRTE*LPSQPPKPPGCRPGCSLIQECGPVAQHCSRS*CCLKYA*SQYH 434
R G+ +A S + P+ P PP P S Q+C ++ + + CC Y + H
Sbjct: 360 RTGKCGIAMMASYPIKKGPNPKPSPP--SPAPSPPQQCDRYSKCPAGTTCCCNYG-IRNH 416
Query: 435 CHETICRSLGVLCVCSRDAPRRHCCPK 515
C C + C +D CCPK
Sbjct: 417 CIVWGCCPVEG-ATCCKD--HSTCCPK 440
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Frame = -3
Query: 660 IAALLMTRNWSTWSQNCGSSIL----NNRSVL---------TAAHCIIDDAVGVWRVRVG 520
+A + W W + G +L ++RSV AA C +D VW +R G
Sbjct: 329 LATASFDKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPDGSLAASCGLDAYARVWDLRSG 388
Query: 519 STWGNSGGVVHHVNRHIIHPN 457
WG G V V PN
Sbjct: 389 RLWGTLMGHVKPVLGVSFSPN 409
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Frame = -3
Query: 660 IAALLMTRNWSTWSQNCGSSIL----NNRSVL---------TAAHCIIDDAVGVWRVRVG 520
+A + W W + G +L ++RSV AA C +D VW +R G
Sbjct: 329 LATASFDKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPDGSLAASCGLDAYARVWDLRSG 388
Query: 519 STWGNSGGVVHHVNRHIIHPN 457
WG G V V PN
Sbjct: 389 RLWGTLMGHVKPVLGVSFSPN 409
>09_06_0303 -
22149214-22149474,22150099-22150236,22150856-22151100,
22151344-22151809
Length = 369
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 612 CGSSILNNRSVLTAAHCIIDDAVGVWRVR--VGSTWGNSG 499
CG+ +N VL + + D + W V+ G WG SG
Sbjct: 290 CGTETKDNHVVLVVGYGVTTDNIKYWIVKNSWGEGWGESG 329
>07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922
Length = 398
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 591 NRSVLTAAHCIIDDAVGVWRVRVGSTWGNSGG-VVHHVNRHII 466
N+SV +A + DDA G+WRVR ++ G V ++ R ++
Sbjct: 102 NQSVTSARY---DDAAGLWRVRAEDVSVDAAGDVTEYIGRWLV 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,519,852
Number of Sequences: 37544
Number of extensions: 497775
Number of successful extensions: 1614
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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