Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b22r
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    28   5.3  
At4g03380.1 68417.m00460 expressed protein                             28   7.0  
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p...    27   9.2  
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ...    27   9.2  
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ...    27   9.2  
At1g76040.1 68414.m08830 calcium-dependent protein kinase, putat...    27   9.2  

>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 45  RERRRQGSGHDRSYFRKSSHQRPRCCDKADLQSHRCMSRDRQRPASQ 185
           R + RQ   H R   R  S +R    D  D   HR  SRDR R  S+
Sbjct: 94  RSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHHR-RSRDRDRRRSR 139


>At4g03380.1 68417.m00460 expressed protein 
          Length = 200

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 435 NDIAIMRTSSNINYVNNAVQPARIPGSNYNLGDN 334
           ND     T +N  + + A+QP  +PG N  +GD+
Sbjct: 161 NDGEAQGTMTNDVHRSEAIQPTLLPGPNQTVGDD 194


>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
           protein contains Pfam profile PF03371: PRP38 family
          Length = 355

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 72  HDRSYFRKSSHQRPRCCDKADLQSHRCMSRDRQR 173
           HDR Y R+  H R R  ++ D   +R   RDR+R
Sbjct: 247 HDRDYERERGHGRDRDRER-DRDHYRERDRDRER 279


>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 357 SNYNLGDNQVVWAAGWGVTRFGGSLSEQLRHVQVWVVNQSV 235
           SNYN    +V+   G G       +  ++  V+ W+VN  +
Sbjct: 114 SNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDI 154


>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
           (FtsZ2-1) identical to chloroplast division protein
           AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
           division protein FtsZ [Arabidopsis thaliana] GI:14195704
          Length = 478

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 357 SNYNLGDNQVVWAAGWGVTRFGGSLSEQLRHVQVWVVNQSV 235
           SNYN    +V+   G G       +  ++  V+ W+VN  +
Sbjct: 114 SNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDI 154


>At1g76040.1 68414.m08830 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase GB:AAC25423 GI:3283996 [Nicotiana tabacum]
          Length = 323

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 540 VWRVRVGSTWGNSGGVVHHVNRHIIHPNYGR 448
           +W + VG  + +  G  ++V   ++H NYG+
Sbjct: 23  IWLIFVGKVYRDIVGSAYYVAPEVLHRNYGK 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,160,343
Number of Sequences: 28952
Number of extensions: 349282
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)