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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b22f
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690     33   0.25 
10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782           30   1.4  
12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113...    29   3.1  
12_01_0016 + 125052-127145                                             29   4.1  
11_01_0016 + 126373-128004                                             29   4.1  
09_04_0528 - 18348071-18348136,18348477-18351209                       29   4.1  
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242...    29   4.1  
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542     29   4.1  
09_06_0287 + 22047404-22048409,22048754-22049967                       28   5.5  
06_01_0769 - 5745324-5746970                                           28   5.5  
04_04_1538 + 34239913-34241274,34241468-34241578                       28   5.5  
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536...    28   5.5  
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440...    28   5.5  
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511...    28   7.2  
07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922     28   7.2  

>08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690
          Length = 392

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 450 GDNQVVWAAGWGVTRFGGSLSEQLRHVQVWVVNQSVCRSR 569
           G N   W   +G++RFGG     L H   WV    +CRSR
Sbjct: 319 GINGRSWNMFFGISRFGGRCLGNLIHGMSWVCVGHLCRSR 358


>10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782
          Length = 379

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 132 IAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDDAVGVWRVRVG 272
           +  L  TR+W+       +S+L +  +   AH + DD  G+W+   G
Sbjct: 116 VQRLQTTRHWACIDALSVASVLLSGDLDATAHALADDGAGLWKKLAG 162


>12_02_1039 +
           25610200-25610538,25611022-25611143,25611243-25611390,
           25611681-25611818,25612106-25612165,25612234-25612392,
           25612714-25612912,25613156-25613260,25613339-25613475,
           25613812-25614037,25614119-25614282,25614408-25614524,
           25614622-25614864,25614959-25615054,25615270-25615287
          Length = 756

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 229 VSSTTQLASGEFESVQLGATVAAWCI 306
           +S++TQ  SG  E+ +LGA +AA CI
Sbjct: 507 LSTSTQALSGSHEAEELGAILAAACI 532


>12_01_0016 + 125052-127145
          Length = 697

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 530 DVTKLLRE*AAEPSDSPASRPNHLVVAQVV 441
           DV  +LR    E   SPASRP+H+    V+
Sbjct: 369 DVVAMLRAMRREGETSPASRPDHVTYTTVI 398


>11_01_0016 + 126373-128004
          Length = 543

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 530 DVTKLLRE*AAEPSDSPASRPNHLVVAQVV 441
           DV  +LR    E   SPASRP+H+    V+
Sbjct: 215 DVVAMLRAMRREGETSPASRPDHVTYTTVI 244


>09_04_0528 - 18348071-18348136,18348477-18351209
          Length = 932

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
 Frame = +3

Query: 342 RWSRDNDIAIMRTSSNINYVNNAVQPARIPGSNYNLGDNQVVWAAGWGVTRFGGSLSE-- 515
           RW+R     I    +N N    + Q   +PG +Y++ DN++V       T       E  
Sbjct: 148 RWTRPLSSGIYVPPTNYN----SEQQLYLPGYDYSINDNELVGIDKNRQTLIESLRLEDC 203

Query: 516 QLRHVQVW----VVNQSVCRSRYGGNTITNNMLCAGWL 617
            LR + VW    +   ++    Y    I +N  C  WL
Sbjct: 204 SLRIIAVWGMGGLGKSTLVNDIYKNEAIVSNFNCHAWL 241


>06_01_0336 +
           2427017-2427121,2427585-2427662,2427889-2427960,
           2428105-2428671,2428822-2428935,2431308-2432246
          Length = 624

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 36  LALSLTAFTAI-SAAPSLRIVGGSTTTINRYPTIAA 140
           L++S TA  +  SAA S+ I G S+T++  YP  AA
Sbjct: 335 LSVSATAMASTTSAAASMLISGSSSTSLAAYPAAAA 370


>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
          Length = 138

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 483 PSQPPKPPGCRPGCSLIQECGPVAQ 409
           P  PP PP C PGC+    C P  Q
Sbjct: 93  PPCPPPPPPCCPGCN---SCRPACQ 114


>09_06_0287 + 22047404-22048409,22048754-22049967
          Length = 739

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 534 LGRDEVAQRVSRRTE*LPSQPPKPPGC-RPGCSLIQECGPVAQHCSRS 394
           +GRD    R+ RR    P QPP P G   P   LI E G VA+  SRS
Sbjct: 204 VGRDSYQVRL-RRLNPSPPQPPPPQGAGDPTVVLIAEQGWVAE-ASRS 249


>06_01_0769 - 5745324-5746970
          Length = 548

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 246 VGVWRVRVGSTWGNSGGVVHHVNRHIIHPNYGRW 347
           V  +R  +   +   G V HH+ R++ HP    W
Sbjct: 291 VPAYRAELDRMFPAKGSVFHHLGRYLFHPGNRAW 324


>04_04_1538 + 34239913-34241274,34241468-34241578
          Length = 490

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 24/87 (27%), Positives = 36/87 (41%)
 Frame = -1

Query: 537 RLGRDEVAQRVSRRTE*LPSQPPKPPGCRPGCSLIQECGPVAQHCSRS*CCLKYA*SQYH 358
           R G+  +A   S   +  P+  P PP   P  S  Q+C   ++  + + CC  Y   + H
Sbjct: 360 RTGKCGIAMMASYPIKKGPNPKPSPP--SPAPSPPQQCDRYSKCPAGTTCCCNYG-IRNH 416

Query: 357 CHETICRSLGVLCVCSRDAPRRHCCPK 277
           C    C  +     C +D     CCPK
Sbjct: 417 CIVWGCCPVEG-ATCCKD--HSTCCPK 440


>03_02_1033 +
           13550955-13551700,13552837-13553290,13553451-13553648,
           13553726-13553807,13554496-13554590
          Length = 524

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
 Frame = +3

Query: 132 IAALLMTRNWSTWSQNCGSSIL----NNRSVL---------TAAHCIIDDAVGVWRVRVG 272
           +A     + W  W  + G  +L    ++RSV           AA C +D    VW +R G
Sbjct: 329 LATASFDKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPDGSLAASCGLDAYARVWDLRSG 388

Query: 273 STWGNSGGVVHHVNRHIIHPN 335
             WG   G V  V      PN
Sbjct: 389 RLWGTLMGHVKPVLGVSFSPN 409


>03_02_1031 +
           13541327-13542072,13543209-13543662,13543823-13544020,
           13544098-13544179,13544868-13544962
          Length = 524

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
 Frame = +3

Query: 132 IAALLMTRNWSTWSQNCGSSIL----NNRSVL---------TAAHCIIDDAVGVWRVRVG 272
           +A     + W  W  + G  +L    ++RSV           AA C +D    VW +R G
Sbjct: 329 LATASFDKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPDGSLAASCGLDAYARVWDLRSG 388

Query: 273 STWGNSGGVVHHVNRHIIHPN 335
             WG   G V  V      PN
Sbjct: 389 RLWGTLMGHVKPVLGVSFSPN 409


>09_06_0303 -
           22149214-22149474,22150099-22150236,22150856-22151100,
           22151344-22151809
          Length = 369

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 180 CGSSILNNRSVLTAAHCIIDDAVGVWRVR--VGSTWGNSG 293
           CG+   +N  VL   + +  D +  W V+   G  WG SG
Sbjct: 290 CGTETKDNHVVLVVGYGVTTDNIKYWIVKNSWGEGWGESG 329


>07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922
          Length = 398

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 201 NRSVLTAAHCIIDDAVGVWRVRVGSTWGNSGG-VVHHVNRHII 326
           N+SV +A +   DDA G+WRVR      ++ G V  ++ R ++
Sbjct: 102 NQSVTSARY---DDAAGLWRVRAEDVSVDAAGDVTEYIGRWLV 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,507,662
Number of Sequences: 37544
Number of extensions: 440834
Number of successful extensions: 1454
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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