BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b22f (642 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690 33 0.25 10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782 30 1.4 12_02_1039 + 25610200-25610538,25611022-25611143,25611243-256113... 29 3.1 12_01_0016 + 125052-127145 29 4.1 11_01_0016 + 126373-128004 29 4.1 09_04_0528 - 18348071-18348136,18348477-18351209 29 4.1 06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242... 29 4.1 03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 29 4.1 09_06_0287 + 22047404-22048409,22048754-22049967 28 5.5 06_01_0769 - 5745324-5746970 28 5.5 04_04_1538 + 34239913-34241274,34241468-34241578 28 5.5 03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 28 5.5 03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 28 5.5 09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511... 28 7.2 07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922 28 7.2 >08_02_0394 - 16632559-16633020,16633156-16633761,16634580-16634690 Length = 392 Score = 32.7 bits (71), Expect = 0.25 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +3 Query: 450 GDNQVVWAAGWGVTRFGGSLSEQLRHVQVWVVNQSVCRSR 569 G N W +G++RFGG L H WV +CRSR Sbjct: 319 GINGRSWNMFFGISRFGGRCLGNLIHGMSWVCVGHLCRSR 358 >10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782 Length = 379 Score = 30.3 bits (65), Expect = 1.4 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = +3 Query: 132 IAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDDAVGVWRVRVG 272 + L TR+W+ +S+L + + AH + DD G+W+ G Sbjct: 116 VQRLQTTRHWACIDALSVASVLLSGDLDATAHALADDGAGLWKKLAG 162 >12_02_1039 + 25610200-25610538,25611022-25611143,25611243-25611390, 25611681-25611818,25612106-25612165,25612234-25612392, 25612714-25612912,25613156-25613260,25613339-25613475, 25613812-25614037,25614119-25614282,25614408-25614524, 25614622-25614864,25614959-25615054,25615270-25615287 Length = 756 Score = 29.1 bits (62), Expect = 3.1 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +1 Query: 229 VSSTTQLASGEFESVQLGATVAAWCI 306 +S++TQ SG E+ +LGA +AA CI Sbjct: 507 LSTSTQALSGSHEAEELGAILAAACI 532 >12_01_0016 + 125052-127145 Length = 697 Score = 28.7 bits (61), Expect = 4.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 530 DVTKLLRE*AAEPSDSPASRPNHLVVAQVV 441 DV +LR E SPASRP+H+ V+ Sbjct: 369 DVVAMLRAMRREGETSPASRPDHVTYTTVI 398 >11_01_0016 + 126373-128004 Length = 543 Score = 28.7 bits (61), Expect = 4.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 530 DVTKLLRE*AAEPSDSPASRPNHLVVAQVV 441 DV +LR E SPASRP+H+ V+ Sbjct: 215 DVVAMLRAMRREGETSPASRPDHVTYTTVI 244 >09_04_0528 - 18348071-18348136,18348477-18351209 Length = 932 Score = 28.7 bits (61), Expect = 4.1 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 6/98 (6%) Frame = +3 Query: 342 RWSRDNDIAIMRTSSNINYVNNAVQPARIPGSNYNLGDNQVVWAAGWGVTRFGGSLSE-- 515 RW+R I +N N + Q +PG +Y++ DN++V T E Sbjct: 148 RWTRPLSSGIYVPPTNYN----SEQQLYLPGYDYSINDNELVGIDKNRQTLIESLRLEDC 203 Query: 516 QLRHVQVW----VVNQSVCRSRYGGNTITNNMLCAGWL 617 LR + VW + ++ Y I +N C WL Sbjct: 204 SLRIIAVWGMGGLGKSTLVNDIYKNEAIVSNFNCHAWL 241 >06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960, 2428105-2428671,2428822-2428935,2431308-2432246 Length = 624 Score = 28.7 bits (61), Expect = 4.1 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = +3 Query: 36 LALSLTAFTAI-SAAPSLRIVGGSTTTINRYPTIAA 140 L++S TA + SAA S+ I G S+T++ YP AA Sbjct: 335 LSVSATAMASTTSAAASMLISGSSSTSLAAYPAAAA 370 >03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542 Length = 138 Score = 28.7 bits (61), Expect = 4.1 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -1 Query: 483 PSQPPKPPGCRPGCSLIQECGPVAQ 409 P PP PP C PGC+ C P Q Sbjct: 93 PPCPPPPPPCCPGCN---SCRPACQ 114 >09_06_0287 + 22047404-22048409,22048754-22049967 Length = 739 Score = 28.3 bits (60), Expect = 5.5 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -1 Query: 534 LGRDEVAQRVSRRTE*LPSQPPKPPGC-RPGCSLIQECGPVAQHCSRS 394 +GRD R+ RR P QPP P G P LI E G VA+ SRS Sbjct: 204 VGRDSYQVRL-RRLNPSPPQPPPPQGAGDPTVVLIAEQGWVAE-ASRS 249 >06_01_0769 - 5745324-5746970 Length = 548 Score = 28.3 bits (60), Expect = 5.5 Identities = 10/34 (29%), Positives = 16/34 (47%) Frame = +3 Query: 246 VGVWRVRVGSTWGNSGGVVHHVNRHIIHPNYGRW 347 V +R + + G V HH+ R++ HP W Sbjct: 291 VPAYRAELDRMFPAKGSVFHHLGRYLFHPGNRAW 324 >04_04_1538 + 34239913-34241274,34241468-34241578 Length = 490 Score = 28.3 bits (60), Expect = 5.5 Identities = 24/87 (27%), Positives = 36/87 (41%) Frame = -1 Query: 537 RLGRDEVAQRVSRRTE*LPSQPPKPPGCRPGCSLIQECGPVAQHCSRS*CCLKYA*SQYH 358 R G+ +A S + P+ P PP P S Q+C ++ + + CC Y + H Sbjct: 360 RTGKCGIAMMASYPIKKGPNPKPSPP--SPAPSPPQQCDRYSKCPAGTTCCCNYG-IRNH 416 Query: 357 CHETICRSLGVLCVCSRDAPRRHCCPK 277 C C + C +D CCPK Sbjct: 417 CIVWGCCPVEG-ATCCKD--HSTCCPK 440 >03_02_1033 + 13550955-13551700,13552837-13553290,13553451-13553648, 13553726-13553807,13554496-13554590 Length = 524 Score = 28.3 bits (60), Expect = 5.5 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 13/81 (16%) Frame = +3 Query: 132 IAALLMTRNWSTWSQNCGSSIL----NNRSVL---------TAAHCIIDDAVGVWRVRVG 272 +A + W W + G +L ++RSV AA C +D VW +R G Sbjct: 329 LATASFDKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPDGSLAASCGLDAYARVWDLRSG 388 Query: 273 STWGNSGGVVHHVNRHIIHPN 335 WG G V V PN Sbjct: 389 RLWGTLMGHVKPVLGVSFSPN 409 >03_02_1031 + 13541327-13542072,13543209-13543662,13543823-13544020, 13544098-13544179,13544868-13544962 Length = 524 Score = 28.3 bits (60), Expect = 5.5 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 13/81 (16%) Frame = +3 Query: 132 IAALLMTRNWSTWSQNCGSSIL----NNRSVL---------TAAHCIIDDAVGVWRVRVG 272 +A + W W + G +L ++RSV AA C +D VW +R G Sbjct: 329 LATASFDKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPDGSLAASCGLDAYARVWDLRSG 388 Query: 273 STWGNSGGVVHHVNRHIIHPN 335 WG G V V PN Sbjct: 389 RLWGTLMGHVKPVLGVSFSPN 409 >09_06_0303 - 22149214-22149474,22150099-22150236,22150856-22151100, 22151344-22151809 Length = 369 Score = 27.9 bits (59), Expect = 7.2 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = +3 Query: 180 CGSSILNNRSVLTAAHCIIDDAVGVWRVR--VGSTWGNSG 293 CG+ +N VL + + D + W V+ G WG SG Sbjct: 290 CGTETKDNHVVLVVGYGVTTDNIKYWIVKNSWGEGWGESG 329 >07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922 Length = 398 Score = 27.9 bits (59), Expect = 7.2 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +3 Query: 201 NRSVLTAAHCIIDDAVGVWRVRVGSTWGNSGG-VVHHVNRHII 326 N+SV +A + DDA G+WRVR ++ G V ++ R ++ Sbjct: 102 NQSVTSARY---DDAAGLWRVRAEDVSVDAAGDVTEYIGRWLV 141 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,507,662 Number of Sequences: 37544 Number of extensions: 440834 Number of successful extensions: 1454 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1406 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1453 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1584867848 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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