Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b22f
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    76   2e-14
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    75   6e-14
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    39   0.003
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    32   0.40 
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    27   8.6  
U53155-8|AAC48263.1|  284|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U28991-5|AAK68311.1|  234|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 63/190 (33%), Positives = 88/190 (46%), Gaps = 5/190 (2%)
 Frame = +3

Query: 87  RIVGGSTTTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDDAVGV-WRV 263
           R++GGS ++ + +P    LL           CG S+++   VLTAAHC   D     + V
Sbjct: 57  RLIGGSESSPHSWPWTVQLLSRLG----HHRCGGSLIDPNFVLTAAHCFAKDRRPTSYSV 112

Query: 264 RVGSTWGNSGGVVHHVNRHIIHPNYG-RWSRDNDIAIMRTSSNINYVNNAVQPARIPGSN 440
           RVG     SG   H V    IHP Y   +    D AIMR    +N  +   +P  +P  +
Sbjct: 113 RVGGHRSGSGS-PHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVN-TSTTARPICLP--S 168

Query: 441 YNLGDNQVVWAAGWGVTRFGGSLS-EQLRHVQVWVVNQSVCRS--RYGGNTITNNMLCAG 611
               +N++    GWG T  G SLS   LR + V +++   C S   Y G     +MLCAG
Sbjct: 169 LPAVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG 228

Query: 612 WLDVGGRDSC 641
           +   G  DSC
Sbjct: 229 Y-SYGKIDSC 237


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
 Frame = +3

Query: 87  RIVGGSTTTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCI-IDDAVGVWRV 263
           R+VGG  T    +P  AAL   RN +T + +CG+SIL+   ++TAAHC   D+ V  + V
Sbjct: 26  RVVGGFETVPGAFPWTAAL---RNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEV 82

Query: 264 RVGSTWGNS----GGVVHHVNRHIIHPNYGRWSRDNDIAIMRTSSNINYVNNAVQPARIP 431
            VG  W N+       + ++ R   +P Y +    +DIAI+         N   QP  +P
Sbjct: 83  VVGD-WDNNQTDGNEQIFYLQRIHFYPLY-KDIFSHDIAILEIPYPGIEFNEYAQPICLP 140

Query: 432 GSNYNLGDNQVVWAAGWGVTRFGGSLSEQLRHVQVWVVNQSVC-RSRYGGNTITNNMLCA 608
             ++     +    +GWG    G   +E+L+   + ++N+  C  S    ++++ +  CA
Sbjct: 141 SKDFVYTPGRQCVVSGWG--SMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCA 198

Query: 609 GWLDVGGRDSC 641
           G+L+ GG DSC
Sbjct: 199 GYLE-GGIDSC 208


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 30/105 (28%), Positives = 54/105 (51%)
 Frame = +3

Query: 81  SLRIVGGSTTTINRYPTIAALLMTRNWSTWSQNCGSSILNNRSVLTAAHCIIDDAVGVWR 260
           S RI+GG++  I+      A L++   +     CG++++++  ++TAAHC +      + 
Sbjct: 35  SFRIIGGNS--IDDGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRSF- 91

Query: 261 VRVGSTWGNSGGVVHHVNRHIIHPNYGRWSRDNDIAIMRTSSNIN 395
           V V     N+      V    IH  Y   + DNDIA++R SS+++
Sbjct: 92  VYVREP-KNNRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLS 135


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 165 TWSQNCGSSILNNRSVLTAAHC 230
           TWS++C  ++ + R +LTA HC
Sbjct: 70  TWSKHCSGTLTSPRHILTATHC 91


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -1

Query: 444 CSLIQECGPVAQHCSR--S*CCLKYA*SQYHCHETICRSLGVLCVCSRDAPRRHCC 283
           CS+   C P    C +  + C   Y  +   C +  CR +  +C  +++   + CC
Sbjct: 539 CSMGHMCDPNTHVCCKGTNRCPKDYVETGEQCTDDNCRGINQICHRTKNGKAKICC 594


>U53155-8|AAC48263.1|  284|Caenorhabditis elegans Hypothetical
           protein ZC513.1 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +2

Query: 107 NDDKSVPNNSCPAYDQE----LEYLVPELRKLYSQQPIRF 214
           N+ KS  +  CP    +    + YL+PE+R LY    + F
Sbjct: 88  NEMKSFVSTQCPTKKHQTYVCVGYLIPEIRHLYPDSTVSF 127


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 444 CSLIQECGPVAQHCSRS*CCLKY 376
           C +  +C P    CS++ CCLKY
Sbjct: 412 CGVPCQCQPGYVQCSQNLCCLKY 434


>U28991-5|AAK68311.1|  234|Caenorhabditis elegans Hypothetical
           protein F08F8.8 protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
 Frame = +3

Query: 231 IIDDAVGVWRVRVGSTWGNSGGVVHHVNRH-IIHPNYG---RWSRDN-DIAIMR----TS 383
           I DD   V   +  ++W N+  + H + RH  I  +YG   R +RDN D  + R    +S
Sbjct: 68  INDDMNDVAGAQSSASWANNPAIQHTLRRHREILRDYGSEYRRARDNVDQVLQRELLLSS 127

Query: 384 SNINYVNNAVQPARIPGSNYNLGDN 458
           SN N  NN +   R  G +  L +N
Sbjct: 128 SNENR-NNPILNNRARGYDMYLKEN 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,643,003
Number of Sequences: 27780
Number of extensions: 343043
Number of successful extensions: 1097
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)