Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b21r
(312 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 96 9e-22
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 90 8e-20
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 31 0.030
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 1.5
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 3.5
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 3.5
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 24 6.1
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 6.1
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 23 8.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 23 8.1
>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 74
Score = 96.3 bits (229), Expect = 9e-22
Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = -2
Query: 212 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 36
MPR+I DIK FL ARRKDA S +IKKN ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60
Query: 35 LPPGLQVKEV 6
LPP L V EV
Sbjct: 61 LPPDLTVTEV 70
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 89.8 bits (213), Expect = 8e-20
Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = -2
Query: 212 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 36
MPR++ DIK FL A R DA S ++KKN VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60
Query: 35 LPPGLQVKEV 6
LPP L V EV
Sbjct: 61 LPPALTVTEV 70
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 31.5 bits (68), Expect = 0.030
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = -2
Query: 152 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 3
KS+ + +N P+ K K + T+VITD+E ++ +KQ +P +Q EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 1.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 231 STSTVKGSKRNTKVSVNVNTIS 296
ST+TVKG K+N + N N IS
Sbjct: 137 STNTVKGRKKNPTTNSNWNGIS 158
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 3.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 229 NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 104
N ST + + ++K+F R +TP ++K R +L+ S F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 3.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 129 VLLYFDRFGVFPPRLN*KVFDIFD 200
VLLY RF V P+L +F FD
Sbjct: 98 VLLYGPRFSVLSPKLYGGIFITFD 121
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 23.8 bits (49), Expect = 6.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 105 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 215
N+ + R L +F VF L+ FD+ D+ +HV
Sbjct: 14 NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.8 bits (49), Expect = 6.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 197 KDIKDFLIKARRKDAKSVKIKKNPEN 120
K I+D+L K ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 23.4 bits (48), Expect = 8.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 206 REIKDIKDFLIKARRKD 156
R IKD+KD KA KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 23.4 bits (48), Expect = 8.1
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 40 CLSFSAF--SLSVMTRVYRNLEHRTLNLTFSGF 132
C+ F + ++ TR++ +L +TL T SGF
Sbjct: 988 CIGFKSAMPEYTLRTRIWASLRSQTLYRTISGF 1020
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,156,352
Number of Sequences: 5004
Number of extensions: 19740
Number of successful extensions: 51
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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