Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b21r
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471    104   2e-23
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528    102   5e-23
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...   100   2e-22
05_02_0053 - 6152204-6152329,6152817-6152981,6154698-6154883,615...    28   1.3  
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123...    27   4.1  
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    26   5.4  
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089...    26   5.4  
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022...    26   5.4  
08_02_1440 - 27113396-27113418,27113976-27114102                       25   9.5  
07_03_1600 - 28024495-28024509,28024681-28024731,28025083-280253...    25   9.5  
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    25   9.5  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score =  104 bits (249), Expect = 2e-23
 Identities = 47/69 (68%), Positives = 60/69 (86%)
 Frame = -2

Query: 212 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 33
           MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 32  PPGLQVKEV 6
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score =  102 bits (245), Expect = 5e-23
 Identities = 46/69 (66%), Positives = 59/69 (85%)
 Frame = -2

Query: 212 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 33
           MP++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 32  PPGLQVKEV 6
           PPGL V+EV
Sbjct: 61  PPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score =  100 bits (240), Expect = 2e-22
 Identities = 45/68 (66%), Positives = 58/68 (85%)
 Frame = -2

Query: 209 PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 30
           P++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91

Query: 29  PGLQVKEV 6
           PGL V+EV
Sbjct: 92  PGLTVQEV 99


>05_02_0053 -
           6152204-6152329,6152817-6152981,6154698-6154883,
           6155055-6155078,6155649-6155822
          Length = 224

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +3

Query: 117 DILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHVED--E*FSTSTVKGSKRNTKVSVNVNT 290
           DIL + + FD       RLN KV   F F R  +   E FS S  K  K    ++V+ NT
Sbjct: 138 DILFLKVNFDENKPMCKRLNVKVLPYFHFYRGADGQLEAFSCSLAKFQKLKDAIAVH-NT 196

Query: 291 ISC 299
             C
Sbjct: 197 ARC 199


>05_01_0178 -
           1235546-1235756,1235869-1235945,1236194-1236347,
           1237067-1237216,1237363-1237484,1237806-1237910,
           1237986-1238213
          Length = 348

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -2

Query: 212 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 51
           MP +   +   L+  + +   +V ++    N + +V C ++L+  +I++K  AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223


>04_03_0554 - 17075142-17075159,17075788-17076591,17076619-17076719,
            17077095-17077751,17077827-17078768,17078837-17078896,
            17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 221  RIVFNQHCQRVQKKHKSICQCQH 289
            R+++N H + + + ++  CQC H
Sbjct: 1162 RVLWNNHLEAMSEDYRRNCQCPH 1184


>02_05_0886 +
           32507324-32507938,32508103-32508252,32508498-32508935,
           32509038-32509151,32509256-32509852
          Length = 637

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 232 QPALSKGPKETQKYLSMSTLLAVSS 306
           QPA +  PKET+ +LS+    A S+
Sbjct: 247 QPAAADEPKETEVFLSLGATAAASA 271


>01_06_1149 -
           34901338-34901466,34901707-34901838,34901940-34902290,
           34902301-34902619,34902756-34902784,34903641-34903715,
           34903799-34903900,34904002-34904120,34904752-34904875,
           34904976-34905026,34905143-34905241,34905751-34905861
          Length = 546

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 269 FCVSFGPFDSAG*KLFVFNMPREIKDIK 186
           FC  F      G  LF++  P E+KD+K
Sbjct: 13  FCFGFSAGIVIGYFLFIYFQPTEVKDVK 40


>08_02_1440 - 27113396-27113418,27113976-27114102
          Length = 49

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 62 EKAEKLKQSLPPGLQ 18
          E A KLKQ LPPG Q
Sbjct: 25 ENANKLKQFLPPGSQ 39


>07_03_1600 -
           28024495-28024509,28024681-28024731,28025083-28025355,
           28025427-28025554,28025645-28025764,28025856-28025933,
           28025993-28026061,28026183-28026213
          Length = 254

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 79  WSSLTKRRLRNLSRVYLQVSKLK 11
           WS LTK+   N+SRV + ++  K
Sbjct: 77  WSKLTKKVASNVSRVVVSLASFK 99


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 191 IKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVIT 69
           ++  +I+A +     V I   P  VK    C++F Y +V+T
Sbjct: 55  LQRLIIEASQNGTDEVYIHDIPGGVKIFEICAKFCYGMVVT 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,231,835
Number of Sequences: 37544
Number of extensions: 116238
Number of successful extensions: 287
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)