Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b21r
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   124   1e-29
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    29   0.52 
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   3.6  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    27   3.6  
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    26   6.4  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    26   6.4  
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    25   8.4  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    25   8.4  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    25   8.4  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  124 bits (300), Expect = 1e-29
 Identities = 56/70 (80%), Positives = 65/70 (92%)
 Frame = -2

Query: 212 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 33
           MP+EIK+IKDFL+KARRKDAKSVKIKKN  N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 32  PPGLQVKEVK 3
           PPG+QVKE+K
Sbjct: 61  PPGIQVKELK 70


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 163 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 47
           G+  NR++   T+  S+S+  A  S  P+SS+T  R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 182 FLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 72
           F  K+R+ + K  K++KN ENV+   R  + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 221 VFNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRCSRFLYTL 78
           +++MP  IK  ++FL+ +  K  K  +K+ K  +    K  C   + TL
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 86  YTLVITDKEKAEKLKQSLPPGLQVKEVK 3
           +T V+  K   EKL +  P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 86  YTLVITDKEKAEKLKQSLPPGLQVKEVK 3
           +T V+  K   EKL +  P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 218 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 111
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 218 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 111
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 218 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 111
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 148 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,424,814
Number of Sequences: 27780
Number of extensions: 109645
Number of successful extensions: 365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)