BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b21f (360 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 96 1e-21 SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 90 1e-19 SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 31 0.041 SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 2.0 SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 4.7 SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 4.7 SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.2 SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 24 8.2 SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 8.2 >SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosaccharomyces pombe|chr 2|||Manual Length = 74 Score = 96.3 bits (229), Expect = 1e-21 Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%) Frame = +2 Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 277 MPR+I DIK FL ARRKDA S +IKKN ++VKFK+RCS++LYTLV+ D +KAEKL+QS Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60 Query: 278 LPPGLQVKEV 307 LPP L V EV Sbjct: 61 LPPDLTVTEV 70 >SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|Schizosaccharomyces pombe|chr 1|||Manual Length = 74 Score = 89.8 bits (213), Expect = 1e-19 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Frame = +2 Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 277 MPR++ DIK FL A R DA S ++KKN VKFK+RCSR+LYTLV+ D +KAEKL+QS Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60 Query: 278 LPPGLQVKEV 307 LPP L V EV Sbjct: 61 LPPALTVTEV 70 >SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schizosaccharomyces pombe|chr 1|||Manual Length = 372 Score = 31.5 bits (68), Expect = 0.041 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +2 Query: 161 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 310 KS+ + +N P+ K K + T+VITD+E ++ +KQ +P +Q EVK Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252 >SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1158 Score = 25.8 bits (54), Expect = 2.0 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 82 STSTVKGSKRNTKVSVNVNTIS 17 ST+TVKG K+N + N N IS Sbjct: 137 STNTVKGRKKNPTTNSNWNGIS 158 >SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosaccharomyces pombe|chr 1|||Manual Length = 398 Score = 24.6 bits (51), Expect = 4.7 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +3 Query: 84 NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 209 N ST + + ++K+F R +TP ++K R +L+ S F Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310 >SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 324 Score = 24.6 bits (51), Expect = 4.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 184 VLLYFDRFGVFPPRLN*KVFDIFD 113 VLLY RF V P+L +F FD Sbjct: 98 VLLYGPRFSVLSPKLYGGIFITFD 121 >SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 412 Score = 24.2 bits (50), Expect = 6.2 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +3 Query: 195 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 326 S S + TP SS N +YL ++ LKK V RL Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202 >SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|Schizosaccharomyces pombe|chr 1|||Manual Length = 161 Score = 23.8 bits (49), Expect = 8.2 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = -3 Query: 208 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 98 N+ + R L +F VF L+ FD+ D+ +HV Sbjct: 14 NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50 >SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9|Schizosaccharomyces pombe|chr 1|||Manual Length = 1223 Score = 23.8 bits (49), Expect = 8.2 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +2 Query: 116 KDIKDFLIKARRKDAKSVKIKKNPEN 193 K I+D+L K ++ +V + K+PEN Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,192,279 Number of Sequences: 5004 Number of extensions: 20509 Number of successful extensions: 52 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 50 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 110009772 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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