Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b21f
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    96   1e-21
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    90   1e-19
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    31   0.041
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   2.0  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   4.7  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   4.7  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.2  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    24   8.2  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   8.2  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 96.3 bits (229), Expect = 1e-21
 Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = +2

Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 277
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 278 LPPGLQVKEV 307
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 89.8 bits (213), Expect = 1e-19
 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +2

Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 277
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 278 LPPGLQVKEV 307
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 31.5 bits (68), Expect = 0.041
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +2

Query: 161 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 310
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +Q  EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 82  STSTVKGSKRNTKVSVNVNTIS 17
           ST+TVKG K+N   + N N IS
Sbjct: 137 STNTVKGRKKNPTTNSNWNGIS 158


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 84  NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 209
           N   ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 184 VLLYFDRFGVFPPRLN*KVFDIFD 113
           VLLY  RF V  P+L   +F  FD
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFD 121


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 195 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 326
           S S +      TP SS       N   +YL ++ LKK   V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 208 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 98
           N+   + R L    +F VF   L+   FD+ D+ +HV
Sbjct: 14  NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 116 KDIKDFLIKARRKDAKSVKIKKNPEN 193
           K I+D+L K    ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,192,279
Number of Sequences: 5004
Number of extensions: 20509
Number of successful extensions: 52
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)