Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b21f
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471 104 2e-23
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528 102 7e-23
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 100 3e-22
05_02_0053 - 6152204-6152329,6152817-6152981,6154698-6154883,615... 28 1.9
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123... 27 5.9
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767... 26 7.7
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 26 7.7
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022... 26 7.7
>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
Length = 69
Score = 104 bits (249), Expect = 2e-23
Identities = 47/69 (68%), Positives = 60/69 (86%)
Frame = +2
Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 280
MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60
Query: 281 PPGLQVKEV 307
PPGL V+EV
Sbjct: 61 PPGLTVQEV 69
>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
Length = 69
Score = 102 bits (245), Expect = 7e-23
Identities = 46/69 (66%), Positives = 59/69 (85%)
Frame = +2
Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 280
MP++I +IKDFL+ ARRKDA+SV+IK+ + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60
Query: 281 PPGLQVKEV 307
PPGL V+EV
Sbjct: 61 PPGLTVQEV 69
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 100 bits (240), Expect = 3e-22
Identities = 45/68 (66%), Positives = 58/68 (85%)
Frame = +2
Query: 104 PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 283
P++I +IKDFL+ ARRKDA+SV+IK+ + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91
Query: 284 PGLQVKEV 307
PGL V+EV
Sbjct: 92 PGLTVQEV 99
>05_02_0053 -
6152204-6152329,6152817-6152981,6154698-6154883,
6155055-6155078,6155649-6155822
Length = 224
Score = 28.3 bits (60), Expect = 1.9
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 196 DILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHVED--E*FSTSTVKGSKRNTKVSVNVNT 23
DIL + + FD RLN KV F F R + E FS S K K ++V+ NT
Sbjct: 138 DILFLKVNFDENKPMCKRLNVKVLPYFHFYRGADGQLEAFSCSLAKFQKLKDAIAVH-NT 196
Query: 22 ISC 14
C
Sbjct: 197 ARC 199
>05_01_0178 -
1235546-1235756,1235869-1235945,1236194-1236347,
1237067-1237216,1237363-1237484,1237806-1237910,
1237986-1238213
Length = 348
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +2
Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 262
MP + + L+ + + +V ++ N + +V C ++L+ +I++K AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223
>04_03_0554 - 17075142-17075159,17075788-17076591,17076619-17076719,
17077095-17077751,17077827-17078768,17078837-17078896,
17079131-17079763,17079886-17079942,17080177-17080702
Length = 1265
Score = 26.2 bits (55), Expect = 7.7
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -2
Query: 92 RIVFNQHCQRVQKKHKSICQCQH 24
R+++N H + + + ++ CQC H
Sbjct: 1162 RVLWNNHLEAMSEDYRRNCQCPH 1184
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 81 QPALSKGPKETQKYLSMSTLLAVSS 7
QPA + PKET+ +LS+ A S+
Sbjct: 247 QPAAADEPKETEVFLSLGATAAASA 271
>01_06_1149 -
34901338-34901466,34901707-34901838,34901940-34902290,
34902301-34902619,34902756-34902784,34903641-34903715,
34903799-34903900,34904002-34904120,34904752-34904875,
34904976-34905026,34905143-34905241,34905751-34905861
Length = 546
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 44 FCVSFGPFDSAG*KLFVFNMPREIKDIK 127
FC F G LF++ P E+KD+K
Sbjct: 13 FCFGFSAGIVIGYFLFIYFQPTEVKDVK 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,430,253
Number of Sequences: 37544
Number of extensions: 120475
Number of successful extensions: 298
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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