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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b21f
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.5  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   4.6  
SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)                 27   4.6  
SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   4.6  
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)                 27   4.6  
SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)                 27   4.6  
SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.6  
SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)                   27   6.1  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        26   8.0  
SB_3599| Best HMM Match : CLN3 (HMM E-Value=1.2e-08)                   26   8.0  

>SB_41824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 110 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFK-VRCSRF-LYTLVITDKEKAEKLKQSLP 283
           E ++ KDFL  A R   KSVK K+  + +    ++ +R+ L T+   DK+  E++ +   
Sbjct: 37  EKEEEKDFLHSAERNSLKSVKPKEEAKELVIPLMKKNRWILPTVEGLDKQAMEEVIKEAQ 96

Query: 284 PGLQVKE 304
             LQ KE
Sbjct: 97  KDLQSKE 103


>SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 239 ITDKEKAEKLKQSLPPGLQVKEV 307
           I + E+ EK+KQ   PGL VK++
Sbjct: 134 ILENERREKIKQFTEPGLTVKKI 156


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 104 PREIKDIKDFLIKARRK-DAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 280
           P+  +D+ + L++ RR   A +  IKK PE++   ++  +    L  T  + +  +  S+
Sbjct: 731 PKLQQDLFNVLVRFRRNLVALACDIKKMPEDINMNIQWQQIETVLKSTYMDDSIDIVASV 790

Query: 281 PPGLQVKEV 307
             G+++ EV
Sbjct: 791 EEGIELYEV 799


>SB_52212| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 384

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 125 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 214
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 191 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 220


>SB_47804| Best HMM Match : E-MAP-115 (HMM E-Value=1.4)
          Length = 402

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +2

Query: 86  LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 262
           L V ++  E+      LI A+R  AKS ++K  PE   F  +C+   Y L++  K+ A+
Sbjct: 137 LGVSDVDAELLKTARSLISAQRAGAKS-EVK--PEMSAFVSKCNAAAYDLILDGKQTAD 192


>SB_18379| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 398

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 125 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 214
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 359 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 388


>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 125 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 214
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268


>SB_46327| Best HMM Match : Rho_N (HMM E-Value=4.2e-05)
          Length = 856

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 125 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 214
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268


>SB_19314| Best HMM Match : Rho_N (HMM E-Value=5.2e-05)
          Length = 708

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 125 KDFLIKARRKDAKSVKIKKNPENVKFKVRC 214
           K+F+ K R K  K V  +K P  VKF   C
Sbjct: 239 KEFITKIRPKVIKLVNDRKKPIKVKFVFTC 268


>SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 243 VMTRVYRNLEHRTLNLTFSGFFFILT 166
           VM R    +  RT++LTFS F  +LT
Sbjct: 198 VMARTVSQITTRTISLTFSRFMVLLT 223


>SB_24778| Best HMM Match : DUF1409 (HMM E-Value=4.2)
          Length = 74

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 116 KDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRF-LYTLVITDKEKAE 262
           KD+KD   K +    + VK KKN + V+ ++  ++  L  ++IT K K E
Sbjct: 25  KDLKDVQEKHKTDKEELVKCKKNIKTVEQELATTKHQLNEMLITVKTKIE 74


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 98   NMPREIKDIKDFLIKARRKDAKSVKIKKNPENV 196
            N  RE KD+   L ++RR +AK+V   KN EN+
Sbjct: 1276 NRVRE-KDLTTALDESRRAEAKAVDKVKNLENI 1307


>SB_3599| Best HMM Match : CLN3 (HMM E-Value=1.2e-08)
          Length = 465

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 150 GKTP-NRSK*RRTLRMSSSRFDAQGSCTPWSSL 245
           GK+P NR K R  L  SSS  D + S   WS L
Sbjct: 2   GKSPSNRDKMREMLEYSSSNDDFRESEDEWSPL 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,735,863
Number of Sequences: 59808
Number of extensions: 149389
Number of successful extensions: 428
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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