BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b21f (360 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 124 1e-29 U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 29 0.74 AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical... 27 5.2 AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical ... 27 5.2 U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 26 9.1 U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 26 9.1 >Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical protein C06B8.8 protein. Length = 70 Score = 124 bits (300), Expect = 1e-29 Identities = 56/70 (80%), Positives = 65/70 (92%) Frame = +2 Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 280 MP+EIK+IKDFL+KARRKDAKSVKIKKN N KFKVRC+ +LYTLV+ DK+KAEKLKQSL Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60 Query: 281 PPGLQVKEVK 310 PPG+QVKE+K Sbjct: 61 PPGIQVKELK 70 >U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical protein F31A3.5 protein. Length = 711 Score = 29.5 bits (63), Expect = 0.74 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 150 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 266 G+ NR++ T+ S+S+ A S P+SS+T R RN Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232 >AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical protein Y75B8A.26 protein. Length = 1144 Score = 26.6 bits (56), Expect = 5.2 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +2 Query: 131 FLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 241 F K+R+ + K K++KN ENV+ R + +Y L I Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559 >AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical protein F52C6.11 protein. Length = 304 Score = 26.6 bits (56), Expect = 5.2 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +2 Query: 92 VFNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRCSRFLYTL 235 +++MP IK ++FL+ + K K +K+ K + K C + TL Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274 >U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion facilitator familyprotein 1, isoform b protein. Length = 561 Score = 25.8 bits (54), Expect = 9.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 227 YTLVITDKEKAEKLKQSLPPGLQVKEVK 310 +T V+ K EKL + P GL +++VK Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462 >U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion facilitator familyprotein 1, isoform a protein. Length = 519 Score = 25.8 bits (54), Expect = 9.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 227 YTLVITDKEKAEKLKQSLPPGLQVKEVK 310 +T V+ K EKL + P GL +++VK Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,609,781 Number of Sequences: 27780 Number of extensions: 113702 Number of successful extensions: 373 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 370 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 373 length of database: 12,740,198 effective HSP length: 73 effective length of database: 10,712,258 effective search space used: 492763868 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -