Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b21f
(360 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S ... 105 7e-24
At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A) 105 7e-24
At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6)... 28 1.6
At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domai... 27 2.8
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 27 5.0
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro... 26 6.6
At5g59450.1 68418.m07451 scarecrow-like transcription factor 11 ... 26 8.7
At5g52950.1 68418.m06570 expressed protein ; expression supporte... 26 8.7
At3g05830.1 68416.m00654 expressed protein 26 8.7
>At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S
RIBOSOMAL PROTEIN L38 - Lycopersicon esculentum,
EMBL:X69979
Length = 69
Score = 105 bits (253), Expect = 7e-24
Identities = 47/69 (68%), Positives = 62/69 (89%)
Frame = +2
Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 280
MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60
Query: 281 PPGLQVKEV 307
PPGL V+++
Sbjct: 61 PPGLSVQDL 69
>At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A)
Length = 69
Score = 105 bits (253), Expect = 7e-24
Identities = 47/69 (68%), Positives = 62/69 (89%)
Frame = +2
Query: 101 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 280
MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCSR+LYTL + D+EKA+KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60
Query: 281 PPGLQVKEV 307
PPGL V+++
Sbjct: 61 PPGLSVQDL 69
>At1g75930.1 68414.m08819 family II extracellular lipase 6 (EXL6)
EXL6 (PMID:11431566); similar to anter-specific
proline-rich protein (APG) SP:P40602 [Arabidopsis
thaliana]
Length = 343
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 86 LFVFNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKV 208
L V + ++KD KD+L K RR + K+K+ N F +
Sbjct: 125 LRVLSAGDQVKDFKDYLKKLRRVVKRKKKVKEIVSNAVFLI 165
>At5g05200.1 68418.m00554 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 540
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 265 FLSLLFVSDDQGVQEP*ASNLELDILRVLLYFDRF-GVFPPRLN 137
FL L+ VS+ G++ P L +L+ LLYFDR+ + P LN
Sbjct: 477 FLDLVRVSESYGLKFPREFAL---LLKQLLYFDRYTRLLAPNLN 517
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 113 IKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFL 226
+KDI L++ + S+ KK+ N++ K+R RF+
Sbjct: 531 MKDIPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRFI 568
>At2g31900.1 68415.m03897 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF01843 DIL
domain, PF00612 IQ calmodulin-binding motif, PF02736
myosin N-terminal SH3-like domain
Length = 1556
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 140 KARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 307
KA +DAK+ +I K N+ Y +I DKE A+ + PP +KEV
Sbjct: 911 KADLEDAKAQEIAKLQNNLTELQEKLDEAYAAIIRDKEAAKLAIEQAPP--IIKEV 964
>At5g59450.1 68418.m07451 scarecrow-like transcription factor 11
(SCL11) scarecrow-like 11, Arabidopsis thaliana,
EMBL:AF036307
Length = 610
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 130 VFDIFDFTRHVEDE*FSTSTVKGSKRNTKVSVNVNTISCQ 11
+FD+FD T H EDE + S + +R V ++ ISC+
Sbjct: 489 LFDMFDTTIHAEDEYKNRSLL---ERELLVRDAMSVISCE 525
>At5g52950.1 68418.m06570 expressed protein ; expression supported
by MPSS
Length = 945
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 113 IKDIKDFLIKARRKDAKSVKIKKN 184
+KD KD + K ++KD+ SV ++N
Sbjct: 670 LKDPKDLVAKFKKKDSSSVASERN 693
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 110 EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDK 250
EIK+I+D + + + + +S +K +N FK+ S + LV+ K
Sbjct: 289 EIKEIRDLISEKQNLNNESWDKQKFWDNSGFKIVVSMSMLMLVVVSK 335
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,202,045
Number of Sequences: 28952
Number of extensions: 106072
Number of successful extensions: 299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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