Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b20r
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 1.2
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 2.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.7
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.6
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 4.8
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c... 26 6.3
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 26 6.3
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.3
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 6.3
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 8.4
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 598 PTTTTFQLLPVSMENSTILHTVALSLDLPVAMSPVKYLMFTLLL 467
P+ T +L ++IL T+ SL + +SP Y +FT LL
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 86 FGKSNANDIYPVVLTSISSFTEWILQN 6
FG S AN + PV L S SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 195 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 374
S+D I L+ F H+E + +Y L E+ +N GYYD D S
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627
Query: 375 L 377
L
Sbjct: 628 L 628
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 104 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 211
+H+ + H S+Y R+R PG N QS H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -2
Query: 622 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAMSPVKYLMFTLLLTIPNS 452
N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L +
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349
Query: 451 LRRITTRM 428
+ +T ++
Sbjct: 350 VNELTLKL 357
>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 689 LLASIPAXSKIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSR 510
L+ IP+ S I ++ + + FQ C G V N ++T+ F+ P Y +A
Sbjct: 34 LIHLIPSQSGIIPWIQVESFNFQGCEGAVFGNPKAITTSALFNALLQSP-YLAALANEFN 92
Query: 509 RN 504
R+
Sbjct: 93 RS 94
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 474 KVNIRYFTGLIATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTS 614
K+ FTG +ATG+ +A IV ++E G +++ + + S
Sbjct: 241 KIAYLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLS 287
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 588 LPFNCYLFPWRILRSCIPSHYRWIFP 511
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 152 DYDNTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 6
D + +L + + +SF K D YP + + FT+ ++QN
Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -2
Query: 697 TCVYWRASQPXPKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALS 524
+CV+ + + + ++SY S NG + + P L+P S + S + VA+S
Sbjct: 116 SCVWLNSVKSFVEKQFSYSSGTNGILATFLTAIPPNIFILLVPKSFDTSMLNLFVAVS 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,240
Number of Sequences: 5004
Number of extensions: 74775
Number of successful extensions: 232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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