BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b20r (728 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 1.2 SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 2.1 SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.7 SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.6 SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 4.8 SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c... 26 6.3 SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 26 6.3 SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.3 SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 6.3 SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 8.4 >SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual Length = 551 Score = 28.3 bits (60), Expect = 1.2 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -2 Query: 598 PTTTTFQLLPVSMENSTILHTVALSLDLPVAMSPVKYLMFTLLL 467 P+ T +L ++IL T+ SL + +SP Y +FT LL Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132 >SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 698 Score = 27.5 bits (58), Expect = 2.1 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -1 Query: 86 FGKSNANDIYPVVLTSISSFTEWILQN 6 FG S AN + PV L S SFT +++++ Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269 >SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schizosaccharomyces pombe|chr 1|||Manual Length = 695 Score = 27.1 bits (57), Expect = 2.7 Identities = 18/61 (29%), Positives = 25/61 (40%) Frame = +3 Query: 195 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 374 S+D I L+ F H+E + +Y L E+ +N GYYD D S Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627 Query: 375 L 377 L Sbjct: 628 L 628 >SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 243 Score = 26.6 bits (56), Expect = 3.6 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +2 Query: 104 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 211 +H+ + H S+Y R+R PG N QS H Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237 >SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr 3|||Manual Length = 828 Score = 26.2 bits (55), Expect = 4.8 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Frame = -2 Query: 622 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAMSPVKYLMFTLLLTIPNS 452 N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L + Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349 Query: 451 LRRITTRM 428 + +T ++ Sbjct: 350 VNELTLKL 357 >SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 121 Score = 25.8 bits (54), Expect = 6.3 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = -1 Query: 689 LLASIPAXSKIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSR 510 L+ IP+ S I ++ + + FQ C G V N ++T+ F+ P Y +A Sbjct: 34 LIHLIPSQSGIIPWIQVESFNFQGCEGAVFGNPKAITTSALFNALLQSP-YLAALANEFN 92 Query: 509 RN 504 R+ Sbjct: 93 RS 94 >SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 500 Score = 25.8 bits (54), Expect = 6.3 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +3 Query: 474 KVNIRYFTGLIATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTS 614 K+ FTG +ATG+ +A IV ++E G +++ + + S Sbjct: 241 KIAYLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLS 287 >SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 25.8 bits (54), Expect = 6.3 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = -3 Query: 588 LPFNCYLFPWRILRSCIPSHYRWIFP 511 LP + + F W +C P H WI P Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447 >SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 277 Score = 25.8 bits (54), Expect = 6.3 Identities = 12/49 (24%), Positives = 22/49 (44%) Frame = -1 Query: 152 DYDNTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 6 D + +L + + +SF K D YP + + FT+ ++QN Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150 >SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 453 Score = 25.4 bits (53), Expect = 8.4 Identities = 15/58 (25%), Positives = 28/58 (48%) Frame = -2 Query: 697 TCVYWRASQPXPKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALS 524 +CV+ + + + ++SY S NG + + P L+P S + S + VA+S Sbjct: 116 SCVWLNSVKSFVEKQFSYSSGTNGILATFLTAIPPNIFILLVPKSFDTSMLNLFVAVS 173 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,300,240 Number of Sequences: 5004 Number of extensions: 74775 Number of successful extensions: 232 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 223 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 232 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 343230174 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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