Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b20f
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 0.84
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 1.5
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 3.4
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 26 4.5
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.5
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 25 7.9
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 7.9
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 7.9
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 7.9
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 7.9
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 28.3 bits (60), Expect = 0.84
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 201 PTTTTFQLLPVSMENSTILHTVALSLDLPVAMSPVKYLMFTLLL 332
P+ T +L ++IL T+ SL + +SP Y +FT LL
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 96 RSLAVQLQTAASTATAKVRTETIVPIESN 10
R L + + A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 3.4
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 177 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAMSPVKYLMFTLLLTIPNS 347
N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L +
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349
Query: 348 LRRITTRM 371
+ +T ++
Sbjct: 350 VNELTLKL 357
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 325 KVNIRYFTGLIATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTS 185
K+ FTG +ATG+ +A IV ++E G +++ + + S
Sbjct: 241 KIAYLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLS 287
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 211 LPFNCYLFPWRILRSCIPSHYRWIFP 288
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 285 PVAMSPVKYLMFTLLLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRV 428
P + V YL+ T+ T+P +L I M A+ + PS A + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 398 WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 303
W +LLV + C NS +R+G Q +IF+
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 322 VNIRYFTGLIATGRSSDNATVCRIVEFSME 233
+N+ Y + L ATG S + TV I E + E
Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -1
Query: 522 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 415
PSD T VP + S PW TTP P W+
Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 25.0 bits (52), Expect = 7.9
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 TAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM-CYSYDAHIL-VVILLREFG 338
T + G P K GYY+T+ S +D G+ + + I + +L R +
Sbjct: 1118 TFGIGGKDPETGEVKPGFGYYETICGGSGAIDGLDGTSGVHTHMTNTRITDLEVLERRYP 1177
Query: 337 MVNSKVNIRYFTGLIATGRSSDNATVCRIVEF 242
++ K IR +G G+ V R +EF
Sbjct: 1178 VILRKFIIRENSG--GAGKYKGGDGVIRDIEF 1207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,950
Number of Sequences: 5004
Number of extensions: 54602
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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