BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b20f (573 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 0.84 SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 1.5 SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 3.4 SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 26 4.5 SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.5 SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 25 7.9 SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 7.9 SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 7.9 SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 7.9 SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 7.9 >SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual Length = 551 Score = 28.3 bits (60), Expect = 0.84 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 201 PTTTTFQLLPVSMENSTILHTVALSLDLPVAMSPVKYLMFTLLL 332 P+ T +L ++IL T+ SL + +SP Y +FT LL Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132 >SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr 3|||Manual Length = 687 Score = 27.5 bits (58), Expect = 1.5 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 96 RSLAVQLQTAASTATAKVRTETIVPIESN 10 R L + + A +A+ K+ TE I+P ESN Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633 >SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr 3|||Manual Length = 828 Score = 26.2 bits (55), Expect = 3.4 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Frame = +3 Query: 177 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAMSPVKYLMFTLLLTIPNS 347 N L+ F T T LLP++ I ++TV LSL + S V+ L+F +L + Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349 Query: 348 LRRITTRM 371 + +T ++ Sbjct: 350 VNELTLKL 357 >SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 500 Score = 25.8 bits (54), Expect = 4.5 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -3 Query: 325 KVNIRYFTGLIATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTS 185 K+ FTG +ATG+ +A IV ++E G +++ + + S Sbjct: 241 KIAYLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLS 287 >SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 25.8 bits (54), Expect = 4.5 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +1 Query: 211 LPFNCYLFPWRILRSCIPSHYRWIFP 288 LP + + F W +C P H WI P Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447 >SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 441 Score = 25.0 bits (52), Expect = 7.9 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +3 Query: 285 PVAMSPVKYLMFTLLLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRV 428 P + V YL+ T+ T+P +L I M A+ + PS A + R+ Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335 >SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 1616 Score = 25.0 bits (52), Expect = 7.9 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -2 Query: 398 WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFH 303 W +LLV + C NS +R+G Q +IF+ Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN 1055 >SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 25.0 bits (52), Expect = 7.9 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -3 Query: 322 VNIRYFTGLIATGRSSDNATVCRIVEFSME 233 +N+ Y + L ATG S + TV I E + E Sbjct: 94 INVEYQSNLSATGESVNTTTVSAINEDTRE 123 >SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1066 Score = 25.0 bits (52), Expect = 7.9 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -1 Query: 522 PSDTLPP*TVVPHPSRSTKIPWGITTPCWIIAPCWM 415 PSD T VP + S PW TTP P W+ Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55 >SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1317 Score = 25.0 bits (52), Expect = 7.9 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Frame = -3 Query: 511 TAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGM-CYSYDAHIL-VVILLREFG 338 T + G P K GYY+T+ S +D G+ + + I + +L R + Sbjct: 1118 TFGIGGKDPETGEVKPGFGYYETICGGSGAIDGLDGTSGVHTHMTNTRITDLEVLERRYP 1177 Query: 337 MVNSKVNIRYFTGLIATGRSSDNATVCRIVEF 242 ++ K IR +G G+ V R +EF Sbjct: 1178 VILRKFIIRENSG--GAGKYKGGDGVIRDIEF 1207 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,510,950 Number of Sequences: 5004 Number of extensions: 54602 Number of successful extensions: 169 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 169 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 244081442 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -