BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b20f (573 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.031 SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 34 0.095 SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17 SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) 31 0.51 SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51 SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51 SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67 SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.88 SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88 SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.5 SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 6.2 SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 28 6.2 SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2 SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2 SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 27 8.2 >SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) Length = 968 Score = 35.5 bits (78), Expect = 0.031 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Frame = +2 Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRNEPGEISYVHFA---VNHPEFSE 352 C G +++ ++ A C G + P+Y +++ G RN P H + HP ++ Sbjct: 93 CGGSLVSPTWVVTAAHCIAGSSHTPSY-KVVTGEHIRNSPEGTEQTHDVKRIITHPTYNS 151 Query: 353 ENYDKDVSIVRVTHAI 400 D++++ ++ + Sbjct: 152 PQLSNDIALIELSSPV 167 >SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) Length = 275 Score = 33.9 bits (74), Expect = 0.095 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = -3 Query: 337 MVNSK-VNIRYFTGLIATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTSALLE 173 M+NS+ +N FTG + TGR AT +V+ +E GS ++V+ + + +E Sbjct: 215 MINSRGINALTFTGSLETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVE 270 >SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 898 Score = 33.1 bits (72), Expect = 0.17 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 2/132 (1%) Frame = +2 Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRR-NEPGEISY-VHFAVNHPEFSEE 355 C G ++ ++ A C Y ++ R N P + ++ + H +FS Sbjct: 57 CGGSLIAKDWVVTAAHCVDRNPTPSGYTVVVGAHHRTGNTPVQNTFRLKQLFKHEQFSMR 116 Query: 356 NYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLHK 535 + D++++++ + + GWG TV GGS + G L + Sbjct: 117 HLKNDIALLQLHEPVKASDKVNTVCLPSSGSRAQAGARCYITGWGRTVGGGSAA-GILQQ 175 Query: 536 LELIVTNKENCR 571 L V +C+ Sbjct: 176 AMLPVAGDSDCQ 187 >SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) Length = 333 Score = 31.5 bits (68), Expect = 0.51 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +2 Query: 143 EVFLPILNQW--FQQCAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRNEPGEIS 313 E F+ + W QC+G ++ H ++ A C H G+++ I+ G S + E+ Sbjct: 138 EPFVSSVKLWSDVMQCSGTLIGPCHVITAAHCIHNGKWFVSPLTAILVGVSNTSSTDELD 197 Query: 314 YVHFAV 331 Y FAV Sbjct: 198 Y--FAV 201 >SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1864 Score = 31.5 bits (68), Expect = 0.51 Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +2 Query: 143 EVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSS---RRNEPGEIS 313 +V L + Q+C G ++ L+ A CF F P + G S RR+ G+ Sbjct: 1253 QVALTLSGNPVQRCGGALIAADWVLTAAHCF-DRFSMPPEWTVQVGVSDMRRRDGKGQSL 1311 Query: 314 YVHFAVNHPEFSEENYDKDVSIVRVTHAIHF 406 + HP+++ +++ D++++++ F Sbjct: 1312 SIKAIFVHPQYNSSSHEHDLAVLQLQQPAEF 1342 >SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 867 Score = 31.5 bits (68), Expect = 0.51 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Frame = +2 Query: 158 ILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRNEPGEISYVHFAV-- 331 I N Q C G ++T ++ A C + +PA ++ G+ R P + ++ Sbjct: 649 IYNSGRQFCGGTLVTPEWVITAAHCVVDK--NPASIQVRLGAQDRTSPDPSVEMRISIRS 706 Query: 332 --NHPEF-SEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQ 502 NHP++ S + D++++R++ + GWGT Sbjct: 707 IHNHPDYGSPKRSSNDIALLRLSRPTILTHRINLACMPNDTVHFPNGTMCYITGWGTLSS 766 Query: 503 GGS 511 GGS Sbjct: 767 GGS 769 >SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 786 Score = 31.1 bits (67), Expect = 0.67 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%) Frame = +2 Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRR-NEPG--EISYVHFAVNHPEFSE 352 C G V++ + L+ A C E + ++ G R N G ++ V ++H +S Sbjct: 574 CGGNVISPWWVLTAAHCVQDE--RASNIKLTMGEWRLFNVDGTEQVIPVERIISHANYSY 631 Query: 353 ENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLH 532 D D +++++T ++F + GWG+T GS S L Sbjct: 632 NTVDYDYALLKLTRPLNF--TQYVQPVCLPDSDFPAGTLCYVTGWGSTNYRGSPSPNYLQ 689 Query: 533 KLELIVTNKENC 568 ++ L + N C Sbjct: 690 EVGLPLVNHSQC 701 >SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) Length = 657 Score = 30.7 bits (66), Expect = 0.88 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 8/150 (5%) Frame = +2 Query: 143 EVFLPILNQWFQQCAGIVLTNYHYLSTATCF--HGEFYDPAYRRIIAGSSRRNE------ 298 E+ L N C G ++ Y L+++ CF + R+ RR E Sbjct: 2 EIILKTPNLTTHYCGGSLIDPYWILTSSHCFWTYNNISTQFEIRLGEHDERRIEGYEEII 61 Query: 299 PGEISYVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDL 478 G+ Y+H + + D DV+++++ F + Sbjct: 62 QGDQLYIHPGLVVGDLISPG-DYDVALIKLKRPAVFHKRVHSVCLPSVTANLTTGTKCFV 120 Query: 479 LGWGTTVQGGSVSDGNLHKLELIVTNKENC 568 GWG T +G S L++LE+ + +KE C Sbjct: 121 TGWGKTAEGSPYSP-VLNELEVDIVSKEVC 149 >SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 669 Score = 30.7 bits (66), Expect = 0.88 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +2 Query: 173 FQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRNEPGEISYVHFA--VNHPEF 346 F C G ++++ ++ A C H Y ++ +R + + + HP++ Sbjct: 129 FHTCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKY 188 Query: 347 SEENYDKDVSIVRVTHAIHF 406 ++ D++++ + + F Sbjct: 189 NDRRIVNDIALLELATPVQF 208 Score = 29.1 bits (62), Expect = 2.7 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 8/141 (5%) Frame = +2 Query: 173 FQQCAGIVLTNYHYLSTATCFH-----GEFYDPAYRRIIAGSSRRNEPGEISY---VHFA 328 F C G ++++ ++ A H G +P ++ G+ ++ + + Sbjct: 452 FHTCGGSLISDRWVVTAAQGIHRNKNPGGRQNPGGYTVVVGAHKKRGSTSVQQSLRLSQI 511 Query: 329 VNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGG 508 + HP++++ D++++ + + F + GWG Sbjct: 512 IEHPKYNDRRIVNDIALLELATPVQFDSAGKVGTVCLTDQRPAPGKRCYITGWGAINGDT 571 Query: 509 SVSDGNLHKLELIVTNKENCR 571 S L + L + + ENCR Sbjct: 572 QQSPDILQQAMLPIASHENCR 592 >SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) Length = 366 Score = 29.9 bits (64), Expect = 1.5 Identities = 8/24 (33%), Positives = 17/24 (70%) Frame = +2 Query: 335 HPEFSEENYDKDVSIVRVTHAIHF 406 HP +S ++YD D++++R+ + F Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222 >SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) Length = 473 Score = 27.9 bits (59), Expect = 6.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +2 Query: 128 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 250 +LV +E + P N+W ++ +LT Y STA G+ Y Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150 >SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1149 Score = 27.9 bits (59), Expect = 6.2 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = -3 Query: 532 VEVAVRYTAALNGSSPSEQI-NKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVI 356 +++ V Y AA+ S Q N+N L Y + D + A + M SY+ + + Sbjct: 303 MKIKVNYVAAVQDESTYSQFYNENNLKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMH 362 Query: 355 LLREFGMVNSK 323 L + G++N + Sbjct: 363 LAKNRGLINGE 373 >SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) Length = 537 Score = 27.9 bits (59), Expect = 6.2 Identities = 17/80 (21%), Positives = 32/80 (40%) Frame = +2 Query: 329 VNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGG 508 ++H +S D D +++++T ++F + GWG+T G Sbjct: 375 ISHANYSYNTVDYDYALLKLTRPLNF--TQYVQPVCLPDSDFPAGTLCYVTGWGSTNYRG 432 Query: 509 SVSDGNLHKLELIVTNKENC 568 S S L ++ L + N C Sbjct: 433 SPSPNYLQEVGLPLVNHSQC 452 >SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 383 Score = 27.5 bits (58), Expect = 8.2 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = +2 Query: 182 CAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRN 295 C G +++ H L+ A C H G Y +R + G RN Sbjct: 168 CTGTLVSPRHVLTAAHCLHTGRDYTKGFRTLRVGFLLRN 206 >SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 398 Score = 27.5 bits (58), Expect = 8.2 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 198 SPTTTTFQLLPVSMENSTILHTVALSLDLPVAMSPVKYLMFTLLLTIPNSL 350 SP+T+ Q++P + + L T + S +LPV + FT IP + Sbjct: 143 SPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQSFRMTFTPPSMIPKPI 193 >SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) Length = 235 Score = 27.5 bits (58), Expect = 8.2 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +2 Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRR--NEPGEISYVHFAVNHPEFSEE 355 C +L+ L+ A C +PA + AG+ RR + ++ V ++H EFS Sbjct: 111 CGASLLSPGWALTAAHCVQRSS-NPADYTLAAGAHRRVNDAHAQVLRVSQVISHKEFSMG 169 Query: 356 NYDKDVSIVRVT 391 + DV+++R++ Sbjct: 170 HLRNDVTLLRLS 181 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,440,618 Number of Sequences: 59808 Number of extensions: 450091 Number of successful extensions: 1058 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 973 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1057 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1361520496 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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