Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12b20f
(573 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.031
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 34 0.095
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) 31 0.51
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.88
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.5
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 6.2
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 28 6.2
SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 27 8.2
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRNEPGEISYVHFA---VNHPEFSE 352
C G +++ ++ A C G + P+Y +++ G RN P H + HP ++
Sbjct: 93 CGGSLVSPTWVVTAAHCIAGSSHTPSY-KVVTGEHIRNSPEGTEQTHDVKRIITHPTYNS 151
Query: 353 ENYDKDVSIVRVTHAI 400
D++++ ++ +
Sbjct: 152 PQLSNDIALIELSSPV 167
>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
Length = 275
Score = 33.9 bits (74), Expect = 0.095
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -3
Query: 337 MVNSK-VNIRYFTGLIATGRSSDNATVCRIVEFSMETGSS*KVVVVGENNTSALLE 173
M+NS+ +N FTG + TGR AT +V+ +E GS ++V+ + + +E
Sbjct: 215 MINSRGINALTFTGSLETGRKVAAATAVNLVKCQLEMGSKNALIVLDDADLDNAVE 270
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 2/132 (1%)
Frame = +2
Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRR-NEPGEISY-VHFAVNHPEFSEE 355
C G ++ ++ A C Y ++ R N P + ++ + H +FS
Sbjct: 57 CGGSLIAKDWVVTAAHCVDRNPTPSGYTVVVGAHHRTGNTPVQNTFRLKQLFKHEQFSMR 116
Query: 356 NYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLHK 535
+ D++++++ + + GWG TV GGS + G L +
Sbjct: 117 HLKNDIALLQLHEPVKASDKVNTVCLPSSGSRAQAGARCYITGWGRTVGGGSAA-GILQQ 175
Query: 536 LELIVTNKENCR 571
L V +C+
Sbjct: 176 AMLPVAGDSDCQ 187
>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
Length = 333
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 143 EVFLPILNQW--FQQCAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRNEPGEIS 313
E F+ + W QC+G ++ H ++ A C H G+++ I+ G S + E+
Sbjct: 138 EPFVSSVKLWSDVMQCSGTLIGPCHVITAAHCIHNGKWFVSPLTAILVGVSNTSSTDELD 197
Query: 314 YVHFAV 331
Y FAV
Sbjct: 198 Y--FAV 201
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +2
Query: 143 EVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSS---RRNEPGEIS 313
+V L + Q+C G ++ L+ A CF F P + G S RR+ G+
Sbjct: 1253 QVALTLSGNPVQRCGGALIAADWVLTAAHCF-DRFSMPPEWTVQVGVSDMRRRDGKGQSL 1311
Query: 314 YVHFAVNHPEFSEENYDKDVSIVRVTHAIHF 406
+ HP+++ +++ D++++++ F
Sbjct: 1312 SIKAIFVHPQYNSSSHEHDLAVLQLQQPAEF 1342
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 31.5 bits (68), Expect = 0.51
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Frame = +2
Query: 158 ILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRNEPGEISYVHFAV-- 331
I N Q C G ++T ++ A C + +PA ++ G+ R P + ++
Sbjct: 649 IYNSGRQFCGGTLVTPEWVITAAHCVVDK--NPASIQVRLGAQDRTSPDPSVEMRISIRS 706
Query: 332 --NHPEF-SEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQ 502
NHP++ S + D++++R++ + GWGT
Sbjct: 707 IHNHPDYGSPKRSSNDIALLRLSRPTILTHRINLACMPNDTVHFPNGTMCYITGWGTLSS 766
Query: 503 GGS 511
GGS
Sbjct: 767 GGS 769
>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 31.1 bits (67), Expect = 0.67
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Frame = +2
Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRR-NEPG--EISYVHFAVNHPEFSE 352
C G V++ + L+ A C E + ++ G R N G ++ V ++H +S
Sbjct: 574 CGGNVISPWWVLTAAHCVQDE--RASNIKLTMGEWRLFNVDGTEQVIPVERIISHANYSY 631
Query: 353 ENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSVSDGNLH 532
D D +++++T ++F + GWG+T GS S L
Sbjct: 632 NTVDYDYALLKLTRPLNF--TQYVQPVCLPDSDFPAGTLCYVTGWGSTNYRGSPSPNYLQ 689
Query: 533 KLELIVTNKENC 568
++ L + N C
Sbjct: 690 EVGLPLVNHSQC 701
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 30.7 bits (66), Expect = 0.88
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 8/150 (5%)
Frame = +2
Query: 143 EVFLPILNQWFQQCAGIVLTNYHYLSTATCF--HGEFYDPAYRRIIAGSSRRNE------ 298
E+ L N C G ++ Y L+++ CF + R+ RR E
Sbjct: 2 EIILKTPNLTTHYCGGSLIDPYWILTSSHCFWTYNNISTQFEIRLGEHDERRIEGYEEII 61
Query: 299 PGEISYVHFAVNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDL 478
G+ Y+H + + D DV+++++ F +
Sbjct: 62 QGDQLYIHPGLVVGDLISPG-DYDVALIKLKRPAVFHKRVHSVCLPSVTANLTTGTKCFV 120
Query: 479 LGWGTTVQGGSVSDGNLHKLELIVTNKENC 568
GWG T +G S L++LE+ + +KE C
Sbjct: 121 TGWGKTAEGSPYSP-VLNELEVDIVSKEVC 149
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 173 FQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRNEPGEISYVHFA--VNHPEF 346
F C G ++++ ++ A C H Y ++ +R + + + HP++
Sbjct: 129 FHTCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKY 188
Query: 347 SEENYDKDVSIVRVTHAIHF 406
++ D++++ + + F
Sbjct: 189 NDRRIVNDIALLELATPVQF 208
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 8/141 (5%)
Frame = +2
Query: 173 FQQCAGIVLTNYHYLSTATCFH-----GEFYDPAYRRIIAGSSRRNEPGEISY---VHFA 328
F C G ++++ ++ A H G +P ++ G+ ++ + +
Sbjct: 452 FHTCGGSLISDRWVVTAAQGIHRNKNPGGRQNPGGYTVVVGAHKKRGSTSVQQSLRLSQI 511
Query: 329 VNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGG 508
+ HP++++ D++++ + + F + GWG
Sbjct: 512 IEHPKYNDRRIVNDIALLELATPVQFDSAGKVGTVCLTDQRPAPGKRCYITGWGAINGDT 571
Query: 509 SVSDGNLHKLELIVTNKENCR 571
S L + L + + ENCR
Sbjct: 572 QQSPDILQQAMLPIASHENCR 592
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 29.9 bits (64), Expect = 1.5
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 335 HPEFSEENYDKDVSIVRVTHAIHF 406
HP +S ++YD D++++R+ + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222
>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 473
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 128 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 250
+LV +E + P N+W ++ +LT Y STA G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150
>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 532 VEVAVRYTAALNGSSPSEQI-NKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVI 356
+++ V Y AA+ S Q N+N L Y + D + A + M SY+ + +
Sbjct: 303 MKIKVNYVAAVQDESTYSQFYNENNLKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMH 362
Query: 355 LLREFGMVNSK 323
L + G++N +
Sbjct: 363 LAKNRGLINGE 373
>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 537
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/80 (21%), Positives = 32/80 (40%)
Frame = +2
Query: 329 VNHPEFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGG 508
++H +S D D +++++T ++F + GWG+T G
Sbjct: 375 ISHANYSYNTVDYDYALLKLTRPLNF--TQYVQPVCLPDSDFPAGTLCYVTGWGSTNYRG 432
Query: 509 SVSDGNLHKLELIVTNKENC 568
S S L ++ L + N C
Sbjct: 433 SPSPNYLQEVGLPLVNHSQC 452
>SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 182 CAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRN 295
C G +++ H L+ A C H G Y +R + G RN
Sbjct: 168 CTGTLVSPRHVLTAAHCLHTGRDYTKGFRTLRVGFLLRN 206
>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 198 SPTTTTFQLLPVSMENSTILHTVALSLDLPVAMSPVKYLMFTLLLTIPNSL 350
SP+T+ Q++P + + L T + S +LPV + FT IP +
Sbjct: 143 SPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQSFRMTFTPPSMIPKPI 193
>SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08)
Length = 235
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRR--NEPGEISYVHFAVNHPEFSEE 355
C +L+ L+ A C +PA + AG+ RR + ++ V ++H EFS
Sbjct: 111 CGASLLSPGWALTAAHCVQRSS-NPADYTLAAGAHRRVNDAHAQVLRVSQVISHKEFSMG 169
Query: 356 NYDKDVSIVRVT 391
+ DV+++R++
Sbjct: 170 HLRNDVTLLRLS 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,440,618
Number of Sequences: 59808
Number of extensions: 450091
Number of successful extensions: 1058
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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