Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b18r
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.49 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.6  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   4.6  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   6.0  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   8.0  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 188 KVNSQKINLTCKHHFEINCL 247
           K+N   I L CKH+F  NC+
Sbjct: 404 KINDDVIQLPCKHYFHENCI 423


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 91   YELIIWHHFIWH*YN**LILRKLFPTLHQHK 183
            Y  I+WHH ++  ++  +I+++LF  +H  +
Sbjct: 918  YLSIVWHHALYDGWSIDIIMQQLFMLIHDRR 948


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 677 TIPIGNQSEVIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLI 543
           TIP+ N S ++ +  Y+ + +        A +C+  +  F+ FLI
Sbjct: 464 TIPLKNASPIVELISYVMKPEFFMKSQQNASDCKKLLSSFLYFLI 508


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 352 CTNNKSCDNNYFKYLIRH 405
           CT N  CD+N   YL+++
Sbjct: 99  CTRNTWCDDNRLNYLVKY 116


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 623 EADILCIKIIEAVECESYVLWFIDFLIQKDRKKNYNY 513
           E  +L I  ++  E ++   W+  + ++KD K  Y Y
Sbjct: 460 EKQVLRIFNVQIEELDAKTPWYYHYELEKDVKSTYEY 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,079
Number of Sequences: 5004
Number of extensions: 50173
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)