Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b18r
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.30 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.40 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 298 LTCHMNTHTYTK*TDCKFCTNNKSCDNN 381
           LT H  THT  K   C++C+ + S   N
Sbjct: 107 LTRHYRTHTGEKPYQCEYCSKSFSVKEN 134



 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 280 YLYSLILTCHMNTHTYTK*TDCKFCTNNKSC 372
           ++ S  L  HM THT  K   CK C    +C
Sbjct: 185 FIQSGQLVIHMRTHTGEKPYVCKACGKGFTC 215


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 337 TDCKFCTNNKSCDNNYFKYLIRHA 408
           T+C FC NN   +  Y K+L++ A
Sbjct: 38  TECVFCRNNGEEEAYYRKHLLKDA 61


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -3

Query: 569 VLWFIDFLIQKDRKKNYNYLTSCLLIDYP 483
           + W     ++ D +  ++YL +C   D+P
Sbjct: 13  LFWQNSASLENDNEFGFSYLLNCKNYDHP 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,102
Number of Sequences: 438
Number of extensions: 3600
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)