Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b18r
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11230.1 68416.m01366 yippee family protein similar to qdgl-1...    29   3.0  
At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SD...    27   9.2  
At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein ...    27   9.2  

>At3g11230.1 68416.m01366 yippee family protein similar to qdgl-1
           [Coturnix coturnix] GI:10441650, Yippee protein [Homo
           sapiens] GI:5713281; contains Pfam profile PF03226:
           Yippee putative zinc-binding protein
          Length = 129

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 665 GNQSEVIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLIQKDRK 528
           G + + + + G  T  DI C+K      C SYV W  +F  +K++K
Sbjct: 53  GKKEDRMMMTGMHTVVDIYCVK------CGSYVGWKYEFAFEKNQK 92


>At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SDR)
           family protein similar to stem secoisolariciresinol
           dehydrogenase GI:13752458 from {Forsythia x intermedia};
           similar to sex determination protein tasselseed 2
           SP:P50160 from [Zea mays]
          Length = 279

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 218 CKHHFEINCLLDFQFTTLF 274
           CKH   +NC+  F  TT F
Sbjct: 183 CKHRIRVNCISPFAITTSF 201


>At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 476

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 219 VNIILRSIVC-WTFNLLLCFHLFI*SHSNLSYE 314
           + +I+ + +C W    L CFHL++ S +  +YE
Sbjct: 247 IALIIYTFICVWFVGGLTCFHLYLMSTNQSTYE 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,616,777
Number of Sequences: 28952
Number of extensions: 224560
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)