BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b18f (635 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z83319-1|CAB05908.1| 322|Caenorhabditis elegans Hypothetical pr... 34 0.098 U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defecti... 29 2.1 U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 29 2.1 Z81536-6|CAB04370.1| 352|Caenorhabditis elegans Hypothetical pr... 29 3.7 Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr... 29 3.7 U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachme... 28 6.4 U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachme... 28 6.4 >Z83319-1|CAB05908.1| 322|Caenorhabditis elegans Hypothetical protein T02D1.3 protein. Length = 322 Score = 33.9 bits (74), Expect = 0.098 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -2 Query: 175 VYIYFINRSFNVNLACSIVRNVIYW*FI 92 +Y++FIN FNV L +V N I+W F+ Sbjct: 190 IYVFFINNWFNVKLDNFLVPNAIFWLFL 217 >U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defective protein 9, isoformd protein. Length = 452 Score = 29.5 bits (63), Expect = 2.1 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -3 Query: 543 HMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 445 H + HT K CKFC + N K++++H Sbjct: 83 HRSVHTALKPYVCKFCGKSSRLKGNLTKHILKH 115 >U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defective protein 9, isoformc protein. Length = 537 Score = 29.5 bits (63), Expect = 2.1 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -3 Query: 543 HMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRH 445 H + HT K CKFC + N K++++H Sbjct: 66 HRSVHTALKPYVCKFCGKSSRLKGNLTKHILKH 98 >Z81536-6|CAB04370.1| 352|Caenorhabditis elegans Hypothetical protein F40D4.8 protein. Length = 352 Score = 28.7 bits (61), Expect = 3.7 Identities = 27/96 (28%), Positives = 41/96 (42%) Frame = -2 Query: 337 IVIIFFPILLDEEVNKPQNI*LTLNSFNDLNAKYISLCQVTLYCNHFRLIPNRIVYIYFI 158 I++ F I+L E+ K + + T SF + N+K S VT F L + +Y I Sbjct: 224 ILLPLFTIVLLYEMKKTRKV-ATSRSFQNSNSKDRSTKLVTFVTITFLLSTVPLGILYII 282 Query: 157 NRSFNVNLACSIVRNVIYW*FILLL*YGHNYLILIC 50 F +L S N + F+L+ LIC Sbjct: 283 KSIFLQSLVISNFANKLQSIFVLISIINGTLHFLIC 318 >Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical protein F56D5.9 protein. Length = 1132 Score = 28.7 bits (61), Expect = 3.7 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -2 Query: 217 TLYCNHFRLIPNRIVYIY-FINRSFNVNLACSI-VRNVIYW*FILLL*YGHNYLILICAL 44 T Y + + ++ F++ F + +I ++N I W FI+L+ +G L +I + Sbjct: 689 TYYHKELKAASESVTFLNKFLDELFEMGRHETIWIQNSIPWYFIVLIIFGSLVLFIILLI 748 Query: 43 LIYSPFVPN 17 ++YS PN Sbjct: 749 ILYS-ITPN 756 >U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachment abnormal protein1, isoform a protein. Length = 309 Score = 27.9 bits (59), Expect = 6.4 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 552 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHAT 439 LT HM HT K C C N + ++ ++ RH+T Sbjct: 271 LTRHMRKHTGDKPFRCSLCDRNFARSDHLSLHMKRHST 308 >U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachment abnormal protein1, isoform b protein. Length = 315 Score = 27.9 bits (59), Expect = 6.4 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 552 LTCHMNTHTYTK*TDCKFCTNNKSCDNNYFKYLIRHAT 439 LT HM HT K C C N + ++ ++ RH+T Sbjct: 277 LTRHMRKHTGDKPFRCSLCDRNFARSDHLSLHMKRHST 314 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,649,286 Number of Sequences: 27780 Number of extensions: 247446 Number of successful extensions: 640 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 615 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 640 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1406256614 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -