Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b18f
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11230.1 68416.m01366 yippee family protein similar to qdgl-1...    30   1.5  
At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SD...    29   3.4  
At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1...    28   6.0  

>At3g11230.1 68416.m01366 yippee family protein similar to qdgl-1
           [Coturnix coturnix] GI:10441650, Yippee protein [Homo
           sapiens] GI:5713281; contains Pfam profile PF03226:
           Yippee putative zinc-binding protein
          Length = 129

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 170 INNPIGNQSEVIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLIQKDRK 322
           +N   G + + + + G  T  DI C+K      C SYV W  +F  +K++K
Sbjct: 48  VNVYAGKKEDRMMMTGMHTVVDIYCVK------CGSYVGWKYEFAFEKNQK 92


>At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SDR)
           family protein similar to stem secoisolariciresinol
           dehydrogenase GI:13752458 from {Forsythia x intermedia};
           similar to sex determination protein tasselseed 2
           SP:P50160 from [Zea mays]
          Length = 279

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 632 CKHHLRSNCLLDFQFTTXF 576
           CKH +R NC+  F  TT F
Sbjct: 183 CKHRIRVNCISPFAITTSF 201


>At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1
           [Coturnix coturnix] GI:10441650, Yippee protein
           [Drosophila melanogaster] GI:5713279; contains Pfam
           profile PF03226: Yippee putative zinc-binding protein
          Length = 128

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 170 INNPIGNQSEVIAIQGYLTEADILCIKIIEAVECESYVLWFIDFLIQKDRK 322
           +N  +G +   + I G+ T ADI C      V C S V W  +    K +K
Sbjct: 48  VNVTVGEKEHRVMITGWHTVADIFC------VSCGSLVGWKYEIAYDKSQK 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,431,872
Number of Sequences: 28952
Number of extensions: 209647
Number of successful extensions: 427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)