Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b17r
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08840.3 68416.m01027 D-alanine--D-alanine ligase family simi...    31   0.61 
At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family simi...    31   0.61 
At3g08840.1 68416.m01028 D-alanine--D-alanine ligase family simi...    31   0.61 
At5g05630.1 68418.m00614 amino acid permease family protein weak...    29   4.3  
At3g18770.1 68416.m02382 expressed protein                             28   5.7  
At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi...    28   5.7  
At1g75030.1 68414.m08715 pathogenesis-related thaumatin family p...    28   7.6  
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim...    27   10.0 
At1g65640.1 68414.m07446 DegP protease, putative contains simila...    27   10.0 

>At3g08840.3 68416.m01027 D-alanine--D-alanine ligase family similar
           to D-alanine--D-alanine ligase (EC 6.3.2.4)
           (D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
           (Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
           D-alanine--D-alanine ligase (EC 6.3.2.4)
           (D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
           (Swiss-Prot:P95803) [Streptococcus mutans]
          Length = 845

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 719 MVAMTNGI-FIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGS 543
           M +M  G+ F  +   G        V TAA   + +    SLS +  + +G N++   G+
Sbjct: 1   MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCMLLGMNKYRGSGA 60

Query: 542 LHTVSRNITHPHYVSNTIK 486
           + TVS+ + +   +S +++
Sbjct: 61  IRTVSKAVGYGQEMSKSLR 79


>At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family similar
           to D-alanine--D-alanine ligase (EC 6.3.2.4)
           (D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
           (Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
           D-alanine--D-alanine ligase (EC 6.3.2.4)
           (D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
           (Swiss-Prot:P95803) [Streptococcus mutans]
          Length = 937

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 719 MVAMTNGI-FIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGS 543
           M +M  G+ F  +   G        V TAA   + +    SLS +  + +G N++   G+
Sbjct: 1   MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCMLLGMNKYRGSGA 60

Query: 542 LHTVSRNITHPHYVSNTIK 486
           + TVS+ + +   +S +++
Sbjct: 61  IRTVSKAVGYGQEMSKSLR 79


>At3g08840.1 68416.m01028 D-alanine--D-alanine ligase family similar
           to D-alanine--D-alanine ligase (EC 6.3.2.4)
           (D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
           (Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
           D-alanine--D-alanine ligase (EC 6.3.2.4)
           (D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
           (Swiss-Prot:P95803) [Streptococcus mutans]
          Length = 519

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 719 MVAMTNGI-FIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGS 543
           M +M  G+ F  +   G        V TAA   + +    SLS +  + +G N++   G+
Sbjct: 1   MASMATGVSFSMTSGIGEGGYDVHRVATAARTTLKLNQKNSLSESTCMLLGMNKYRGSGA 60

Query: 542 LHTVSRNITHPHYVSNTIK 486
           + TVS+ + +   +S +++
Sbjct: 61  IRTVSKAVGYGQEMSKSLR 79


>At5g05630.1 68418.m00614 amino acid permease family protein weak
           similarity to y+LAT1a (amino acid transporter) [Mus
           musculus] GI:3970791; contains Pfam profile PF00324:
           Amino acid permease
          Length = 490

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 449 VFNNRVRPISLSFDYVPGGVPVRVAGWGRVRANGALSTNLLEINVR 312
           V +N + PI L  DY+  G+P+  +G  RV A   L+  L  +N R
Sbjct: 142 VIDNALYPI-LFLDYLKSGIPILGSGIPRVAAILVLTVALTYLNYR 186


>At3g18770.1 68416.m02382 expressed protein 
          Length = 625

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 45  VLLQPGPEGADSDEHVRSSPCAREAPRHDADLET 146
           V   P P  +DS   V S PC+R  P H +D+ T
Sbjct: 324 VSCSPSPTRSDSHALV-SHPCSRHLPPHPSDIPT 356


>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile: PF00515 TPR Domain (5
           copies)
          Length = 1064

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -3

Query: 665 VLTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGSLHTVSRNITHPHYVSNTIK 486
           V + RS +T+   IVA+  L +LS  L+   G       G  H       +PH  SN I+
Sbjct: 640 VASTRSYITSQEEIVAMHYLIALSKLLKTGAGDFLGYEKGIAHLSKAIHMYPH--SNLIR 697

Query: 485 NDLGILI 465
           N LG ++
Sbjct: 698 NLLGYIL 704


>At1g75030.1 68414.m08715 pathogenesis-related thaumatin family
           protein identical to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile: PF00314
           Thaumatin family
          Length = 246

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -3

Query: 218 CTFHAEGTGTC-NGDSGSALARTDSGL 141
           C F A G GTC  GD G  L  T  G+
Sbjct: 79  CNFDASGHGTCVTGDCGGVLKCTGGGV 105


>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
           similar to DEIH-box RNA/DNA helicase [Arabidopsis
           thaliana] GI:5881579; contains Pfam profiles PF04408:
           Helicase associated domain (HA2), PF00271: Helicase
           conserved C-terminal domain
          Length = 1299

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -3

Query: 746 QAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIV 621
           Q+  G H  +V  TNGI +R  V  GSV    SV    H IV
Sbjct: 274 QSKGGRHSSVVFCTNGILLRVLVGKGSV---SSVSDITHIIV 312


>At1g65640.1 68414.m07446 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 518

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -3

Query: 662 LTARSVLTAAHCIVAVFTLGSLSGNLRLTVGTNQWNSGGSLHTVS--RNITHPHYVSNTI 489
           +T+ S+  A + +V VFT+ S+   L+      Q  SGGS   +S  + +T+ H V++ I
Sbjct: 63  VTSSSIDFAVNSVVKVFTVYSMPSVLQPWRNWPQQESGGSGFVISGKKILTNAHVVADHI 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,750,999
Number of Sequences: 28952
Number of extensions: 356136
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)