Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b16f
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   1.5  
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.7  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    26   3.5  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   4.7  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   4.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   6.2  

>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 448 HELRPKCYCYFLYIVFLTSPNFHP 377
           H +R  C C F +  F+TS  FHP
Sbjct: 336 HPVRKDCLCCFEHSDFVTSIAFHP 359


>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +3

Query: 114 LGDLP*T*GLSETKIDFCEVRISSVLLWCHRGLTH*LCLRLPVLASTPYALEKLGHHSPV 293
           L DL    GLS  KID  ++ +S+    CH+GL       L VL  +P A+ +L    P 
Sbjct: 188 LADLTQQVGLS--KIDVQDLNVSACAFSCHKGLG--CPTGLGVLYVSPLAISELRSTPPF 243

Query: 294 RSG 302
             G
Sbjct: 244 VGG 246


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 580 ILLYIKI*NALSDNNISQENISIYIDLTVRSL*INLDFVWLN-CTHELRPKCYCYFLYIV 404
           I+L++KI     D   S   I  YI+L   +  +NL  +++   +++++ + Y  FL +V
Sbjct: 444 IILFLKISGLAVDEYTSDSIIQAYIELLASAKKVNLVPLYIQYLSNQVQYEAYSRFLILV 503


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 190 FYGVIVGSPIDFVCAY 237
           FY  + G+PIDF C Y
Sbjct: 467 FYSFLPGNPIDFSCNY 482


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 237 PVLASTPYALEKLGHH 284
           P+L+  P  LEK GHH
Sbjct: 68  PILSEKPMFLEKFGHH 83


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 550  LSDNNISQ----ENISIYIDLTVRSL*INLDFVWLNCTHELRPKCYCYFLYIVFL 398
            +SD+ IS     EN  + +  TVR L + +  ++L    ++  K Y  F+Y  F+
Sbjct: 1030 VSDDQISSQEAFENFEVKMAYTVRQLSLKVFLLFLKSCSDVDFKPYNVFIYTAFV 1084


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,943
Number of Sequences: 5004
Number of extensions: 45424
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)