Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b16f
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    30   1.2  
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842...    29   3.6  
12_01_0753 + 6810239-6810661,6812495-6812584,6812724-6812894,681...    28   6.3  
05_06_0018 + 24966721-24968856                                         28   6.3  
01_01_0019 + 141084-141631,142191-142431,142563-142680,142749-14...    27   8.4  

>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 481  INLDFVWLN-CTHELRPKCYCYFLYIVFLTSPNFHPVVQSPAGCVRNV 341
            + L  +W N C H L+P C  +  Y   L   + HP+  S   C R +
Sbjct: 2427 LKLYAIWFNWCNHLLQPYCNFFENYGNILKKESDHPIWHSILECYREI 2474


>12_02_0947 +
           24680119-24681497,24682213-24682275,24683380-24684239,
           24684399-24684772,24685932-24686112,24686201-24686220
          Length = 958

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 382 HPVVQSPAGCVRNVKSGKGGTESAVSKPD 296
           HP    P     N+ +G+G TESA+S  D
Sbjct: 503 HPQTSKPYPVCDNMLNGRGNTESAISSND 531


>12_01_0753 +
           6810239-6810661,6812495-6812584,6812724-6812894,
           6813015-6813109,6813538-6813658,6813884-6814015
          Length = 343

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -1

Query: 336 AAKVEPSPP*VSLIEPDCD-APTSLARMALMRVPVG-ANKVNG*AHDDTIEARTKFSLRK 163
           AA VEP PP V+L+  +   A  ++AR A++R     A  +   A  DT E + + ++R 
Sbjct: 92  AAAVEPPPPEVALLARNFSVAVDTVARSAMLRGAADLAGSLRLSAKHDTKEQKGEVAVRA 151

Query: 162 SLSWFP 145
           +L   P
Sbjct: 152 NLGDSP 157


>05_06_0018 + 24966721-24968856
          Length = 711

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 26/80 (32%), Positives = 31/80 (38%)
 Frame = +2

Query: 152 QDRLLRSENFVRASMVSSWAHPLTLFAPTGTRINAIRAREVGASQSGSIRLTHGGLGSTF 331
           QD   R E FV       WA  L L   +         RE   SQ   + L H  L +  
Sbjct: 73  QDGPFRGETFVL------WAAALLLIQASAYAAPVHSRREF--SQRKKLLLQHV-LQTAL 123

Query: 332 AAFDITNAAGRGLNYRVEIW 391
             + I NA GR  +YR  IW
Sbjct: 124 VLWLIANATGRNASYRAAIW 143


>01_01_0019 +
           141084-141631,142191-142431,142563-142680,142749-142789,
           143114-143146,145028-145082,145179-145339,145450-145719,
           146106-146184,146311-146375,146507-146575
          Length = 559

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 357 AAFVMSKAAKVEPSPP*VSLIEPDCDAPTSLARMALM 247
           AA  +++A    P+PP ++   PD D PTS   +A +
Sbjct: 11  AAVAVAEAPSPAPAPPLLTWPTPDPDPPTSWTAVAAL 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,616,972
Number of Sequences: 37544
Number of extensions: 295882
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)