BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12b15r (669 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c... 27 3.2 SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 4.3 SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 5.6 SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 5.6 SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 9.9 SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 9.9 SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 9.9 >SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 113 Score = 26.6 bits (56), Expect = 3.2 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +2 Query: 362 NKKKSCKRNRLFNVIQNVNHNLYGSYR 442 N+K++C+ L+NV +NH+ YR Sbjct: 57 NRKETCQFPPLYNVEAKINHSYSAFYR 83 >SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 848 Score = 26.2 bits (55), Expect = 4.3 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +1 Query: 490 C*NKNYPFSFSINLTKHVVVPHS 558 C NKN SFS + TK ++VP S Sbjct: 498 CSNKNIQISFSSDRTKGILVPLS 520 >SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 979 Score = 25.8 bits (54), Expect = 5.6 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +3 Query: 261 LSNSKALSTISINYLIYT 314 + ++KALS IS NY+ YT Sbjct: 199 IESNKALSNISFNYVYYT 216 >SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1583 Score = 25.8 bits (54), Expect = 5.6 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%) Frame = -3 Query: 634 FDCLCL--LPYVILERPLVI 581 F C+CL +PYV +E PL+I Sbjct: 1452 FCCVCLAGIPYVSIEEPLMI 1471 >SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1372 Score = 25.0 bits (52), Expect = 9.9 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -3 Query: 640 NIFDCLCLL 614 NIFDCLCLL Sbjct: 588 NIFDCLCLL 596 >SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 817 Score = 25.0 bits (52), Expect = 9.9 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +1 Query: 496 NKNYPFSFSINLTKHVVVPHSFT 564 N+N PF F+ NL K + +P+S T Sbjct: 361 NQNLPFCFTPNLEK-LTIPYSVT 382 >SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 25.0 bits (52), Expect = 9.9 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +1 Query: 109 PTANCKLKII*NQERYY*NEQTTGIF 186 P NC + I + RY+ NE+ GI+ Sbjct: 169 PDENCWMSYIRMERRYHENERARGIY 194 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,696,196 Number of Sequences: 5004 Number of extensions: 54812 Number of successful extensions: 84 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 84 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 305854096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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