Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b15r
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    27   3.2  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   4.3  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   5.6  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   5.6  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.9  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   9.9  

>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 362 NKKKSCKRNRLFNVIQNVNHNLYGSYR 442
           N+K++C+   L+NV   +NH+    YR
Sbjct: 57  NRKETCQFPPLYNVEAKINHSYSAFYR 83


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 490 C*NKNYPFSFSINLTKHVVVPHS 558
           C NKN   SFS + TK ++VP S
Sbjct: 498 CSNKNIQISFSSDRTKGILVPLS 520


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 261 LSNSKALSTISINYLIYT 314
           + ++KALS IS NY+ YT
Sbjct: 199 IESNKALSNISFNYVYYT 216


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = -3

Query: 634  FDCLCL--LPYVILERPLVI 581
            F C+CL  +PYV +E PL+I
Sbjct: 1452 FCCVCLAGIPYVSIEEPLMI 1471


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 640 NIFDCLCLL 614
           NIFDCLCLL
Sbjct: 588 NIFDCLCLL 596


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 496 NKNYPFSFSINLTKHVVVPHSFT 564
           N+N PF F+ NL K + +P+S T
Sbjct: 361 NQNLPFCFTPNLEK-LTIPYSVT 382


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 109 PTANCKLKII*NQERYY*NEQTTGIF 186
           P  NC +  I  + RY+ NE+  GI+
Sbjct: 169 PDENCWMSYIRMERRYHENERARGIY 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,196
Number of Sequences: 5004
Number of extensions: 54812
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)