Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12b15r
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_55979| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    28   7.9  
SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198 LILLFINS-IKLTYSYVGINFILSNSKALSTISINYLIYTSYHG*C 332
           +I LF  S     Y Y   NF ++      +I +N L+  SYHG C
Sbjct: 264 IISLFSRSGAAFLYFYSDANFAMNGFSIKYSIKLNCLVKCSYHGDC 309


>SB_55979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 104 FDLQLIAS*RSYEIKKGTIKMNKQRAY-LRQTVNIIIY 214
           FDL L A      IK+G ++++ Q A  L+ TVN I+Y
Sbjct: 18  FDLSLAAGPHVSPIKQGNLRVSAQFAEGLQDTVNCILY 55


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 216  NSIKLTYSYVGINFILSNSKALSTISINYLIYTSYHG*CVCGL 344
            N+ +L   Y  +   L N   +ST+S    +Y  Y G  + GL
Sbjct: 1771 NAYRLKNQYKSLKLFLPNEVVMSTVSYELTLYLRYRGKHLRGL 1813


>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 637  IFDCLCLLPYVILERPLVINHQMST*KNVEPLHVLLS 527
            + D L   PY I E PL + H++ T  +V   +VL S
Sbjct: 1338 VADNLAYFPYAIQEEPLFLMHKIDTMLSVAGANVLQS 1374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,942,515
Number of Sequences: 59808
Number of extensions: 359765
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)